Hb_001798_020

Information

Type -
Description -
Location Contig1798: 19607-21449
Sequence    

Annotation

kegg
ID csv:101209650
description uncharacterized LOC101209650
nr
ID XP_010252449.1
description PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
swissprot
ID P92520
description Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1
trembl
ID A5AWA5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002891 PE=4 SV=1
Gene Ontology
ID GO:0000166
description retrotransposon protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001798_020 0.0 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
2 Hb_001104_050 0.1272371748 - - -
3 Hb_001391_120 0.1391207134 - - Acetyl esterase, putative [Ricinus communis]
4 Hb_012368_070 0.2670345077 - - RNA binding protein, putative [Ricinus communis]
5 Hb_008479_020 0.2970584718 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
6 Hb_003052_230 0.3005815296 - - conserved hypothetical protein [Ricinus communis]
7 Hb_024898_020 0.3036181053 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_015909_010 0.3041341838 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_009813_080 0.309762419 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
10 Hb_002311_170 0.3145919964 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
11 Hb_008759_020 0.3160844934 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
12 Hb_002097_020 0.3185686858 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
13 Hb_001085_100 0.3234069924 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_003626_010 0.3235312832 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
15 Hb_020178_010 0.3290367989 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
16 Hb_006503_010 0.3316902564 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_009775_040 0.341216288 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
18 Hb_012636_010 0.3431189404 - - -
19 Hb_000223_180 0.3434070531 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
20 Hb_001832_020 0.3464243553 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]

Gene co-expression network

sample Hb_001798_020 Hb_001798_020 Hb_001104_050 Hb_001104_050 Hb_001798_020--Hb_001104_050 Hb_001391_120 Hb_001391_120 Hb_001798_020--Hb_001391_120 Hb_012368_070 Hb_012368_070 Hb_001798_020--Hb_012368_070 Hb_008479_020 Hb_008479_020 Hb_001798_020--Hb_008479_020 Hb_003052_230 Hb_003052_230 Hb_001798_020--Hb_003052_230 Hb_024898_020 Hb_024898_020 Hb_001798_020--Hb_024898_020 Hb_001104_050--Hb_001391_120 Hb_001104_050--Hb_012368_070 Hb_006503_010 Hb_006503_010 Hb_001104_050--Hb_006503_010 Hb_000853_040 Hb_000853_040 Hb_001104_050--Hb_000853_040 Hb_001470_070 Hb_001470_070 Hb_001104_050--Hb_001470_070 Hb_002097_020 Hb_002097_020 Hb_001391_120--Hb_002097_020 Hb_020178_010 Hb_020178_010 Hb_001391_120--Hb_020178_010 Hb_009775_040 Hb_009775_040 Hb_001391_120--Hb_009775_040 Hb_015909_010 Hb_015909_010 Hb_001391_120--Hb_015909_010 Hb_007849_010 Hb_007849_010 Hb_012368_070--Hb_007849_010 Hb_005144_190 Hb_005144_190 Hb_012368_070--Hb_005144_190 Hb_007317_080 Hb_007317_080 Hb_012368_070--Hb_007317_080 Hb_000694_060 Hb_000694_060 Hb_012368_070--Hb_000694_060 Hb_001085_100 Hb_001085_100 Hb_008479_020--Hb_001085_100 Hb_001832_020 Hb_001832_020 Hb_008479_020--Hb_001832_020 Hb_009813_080 Hb_009813_080 Hb_008479_020--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_008479_020--Hb_002311_170 Hb_008479_020--Hb_003052_230 Hb_027472_230 Hb_027472_230 Hb_008479_020--Hb_027472_230 Hb_083103_030 Hb_083103_030 Hb_003052_230--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_003052_230--Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_003052_230--Hb_172503_010 Hb_001995_020 Hb_001995_020 Hb_003052_230--Hb_001995_020 Hb_115472_010 Hb_115472_010 Hb_003052_230--Hb_115472_010 Hb_002374_500 Hb_002374_500 Hb_024898_020--Hb_002374_500 Hb_153470_010 Hb_153470_010 Hb_024898_020--Hb_153470_010 Hb_164646_010 Hb_164646_010 Hb_024898_020--Hb_164646_010 Hb_024898_020--Hb_083103_030 Hb_024898_020--Hb_103832_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0198034 0.0177929 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0427852 0 0.0344611 0

CAGE analysis