Hb_015909_010

Information

Type -
Description -
Location Contig15909: 333-5083
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015909_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_005269_030 0.271350321 - - cysteine protease, putative [Ricinus communis]
3 Hb_001391_120 0.2896053607 - - Acetyl esterase, putative [Ricinus communis]
4 Hb_001414_130 0.2947512148 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_001798_020 0.3041341838 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
6 Hb_000160_240 0.3088944285 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
7 Hb_005276_170 0.3104845542 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
8 Hb_001811_130 0.3108049441 - - -
9 Hb_004088_060 0.312549103 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
10 Hb_001214_150 0.3210337872 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
11 Hb_001104_050 0.3213749518 - - -
12 Hb_000610_020 0.328126324 - - unknown [Glycine max]
13 Hb_000482_060 0.3447944025 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
14 Hb_001486_150 0.3459145253 - - -
15 Hb_021943_030 0.3513594186 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_012636_010 0.3539773576 - - -
17 Hb_009775_040 0.3603348643 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
18 Hb_011077_020 0.3638125353 - - kinase, putative [Ricinus communis]
19 Hb_001085_100 0.3674677454 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_002211_040 0.3677440897 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]

Gene co-expression network

sample Hb_015909_010 Hb_015909_010 Hb_005269_030 Hb_005269_030 Hb_015909_010--Hb_005269_030 Hb_001391_120 Hb_001391_120 Hb_015909_010--Hb_001391_120 Hb_001414_130 Hb_001414_130 Hb_015909_010--Hb_001414_130 Hb_001798_020 Hb_001798_020 Hb_015909_010--Hb_001798_020 Hb_000160_240 Hb_000160_240 Hb_015909_010--Hb_000160_240 Hb_005276_170 Hb_005276_170 Hb_015909_010--Hb_005276_170 Hb_005269_030--Hb_001414_130 Hb_011030_030 Hb_011030_030 Hb_005269_030--Hb_011030_030 Hb_002003_110 Hb_002003_110 Hb_005269_030--Hb_002003_110 Hb_003311_050 Hb_003311_050 Hb_005269_030--Hb_003311_050 Hb_094101_010 Hb_094101_010 Hb_005269_030--Hb_094101_010 Hb_001391_120--Hb_001798_020 Hb_001104_050 Hb_001104_050 Hb_001391_120--Hb_001104_050 Hb_002097_020 Hb_002097_020 Hb_001391_120--Hb_002097_020 Hb_020178_010 Hb_020178_010 Hb_001391_120--Hb_020178_010 Hb_009775_040 Hb_009775_040 Hb_001391_120--Hb_009775_040 Hb_001414_130--Hb_094101_010 Hb_001414_130--Hb_003311_050 Hb_000832_330 Hb_000832_330 Hb_001414_130--Hb_000832_330 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_018118_040 Hb_018118_040 Hb_001414_130--Hb_018118_040 Hb_001798_020--Hb_001104_050 Hb_012368_070 Hb_012368_070 Hb_001798_020--Hb_012368_070 Hb_008479_020 Hb_008479_020 Hb_001798_020--Hb_008479_020 Hb_003052_230 Hb_003052_230 Hb_001798_020--Hb_003052_230 Hb_024898_020 Hb_024898_020 Hb_001798_020--Hb_024898_020 Hb_000976_290 Hb_000976_290 Hb_000160_240--Hb_000976_290 Hb_006026_010 Hb_006026_010 Hb_000160_240--Hb_006026_010 Hb_002273_080 Hb_002273_080 Hb_000160_240--Hb_002273_080 Hb_002686_280 Hb_002686_280 Hb_000160_240--Hb_002686_280 Hb_002273_050 Hb_002273_050 Hb_000160_240--Hb_002273_050 Hb_020805_170 Hb_020805_170 Hb_000160_240--Hb_020805_170 Hb_002205_010 Hb_002205_010 Hb_005276_170--Hb_002205_010 Hb_005488_120 Hb_005488_120 Hb_005276_170--Hb_005488_120 Hb_006846_020 Hb_006846_020 Hb_005276_170--Hb_006846_020 Hb_005288_020 Hb_005288_020 Hb_005276_170--Hb_005288_020 Hb_000009_310 Hb_000009_310 Hb_005276_170--Hb_000009_310 Hb_005400_040 Hb_005400_040 Hb_005276_170--Hb_005400_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0217597 0.00735092 0 0.00442062 0.00430601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0168446 0 0.0166785 0

CAGE analysis