Hb_004088_060

Information

Type -
Description -
Location Contig4088: 56761-62313
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01875g
description POPTRDRAFT_772385; hypothetical protein
nr
ID XP_002318391.1
description hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I581
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01875g PE=4 SV=1
Gene Ontology
ID GO:0097159
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40382: 59511-59905 , PASA_asmbl_40383: 59962-60614 , PASA_asmbl_40384: 60923-61339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004088_060 0.0 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
2 Hb_001414_130 0.2660357312 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_001638_080 0.2689083647 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
4 Hb_010874_030 0.2800594107 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
5 Hb_005048_060 0.2982016819 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001214_150 0.3056584287 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
7 Hb_015909_010 0.312549103 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000866_200 0.3156406339 - - -
9 Hb_000482_060 0.3235881384 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
10 Hb_000237_130 0.3260247772 - - -
11 Hb_001268_100 0.3315942132 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
12 Hb_005269_030 0.3379309745 - - cysteine protease, putative [Ricinus communis]
13 Hb_000787_040 0.3385798488 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
14 Hb_002211_040 0.3405466019 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
15 Hb_134310_030 0.341207911 - - hypothetical protein JCGZ_10790 [Jatropha curcas]
16 Hb_001225_090 0.3433009029 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
17 Hb_000160_240 0.3445793329 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
18 Hb_010661_040 0.3461071372 - - hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
19 Hb_000608_210 0.3474325838 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
20 Hb_000215_350 0.3476533454 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_004088_060 Hb_004088_060 Hb_001414_130 Hb_001414_130 Hb_004088_060--Hb_001414_130 Hb_001638_080 Hb_001638_080 Hb_004088_060--Hb_001638_080 Hb_010874_030 Hb_010874_030 Hb_004088_060--Hb_010874_030 Hb_005048_060 Hb_005048_060 Hb_004088_060--Hb_005048_060 Hb_001214_150 Hb_001214_150 Hb_004088_060--Hb_001214_150 Hb_015909_010 Hb_015909_010 Hb_004088_060--Hb_015909_010 Hb_094101_010 Hb_094101_010 Hb_001414_130--Hb_094101_010 Hb_003311_050 Hb_003311_050 Hb_001414_130--Hb_003311_050 Hb_005269_030 Hb_005269_030 Hb_001414_130--Hb_005269_030 Hb_000832_330 Hb_000832_330 Hb_001414_130--Hb_000832_330 Hb_018118_040 Hb_018118_040 Hb_001414_130--Hb_018118_040 Hb_002007_200 Hb_002007_200 Hb_001638_080--Hb_002007_200 Hb_002272_080 Hb_002272_080 Hb_001638_080--Hb_002272_080 Hb_001183_010 Hb_001183_010 Hb_001638_080--Hb_001183_010 Hb_028487_020 Hb_028487_020 Hb_001638_080--Hb_028487_020 Hb_088753_010 Hb_088753_010 Hb_001638_080--Hb_088753_010 Hb_037767_010 Hb_037767_010 Hb_001638_080--Hb_037767_010 Hb_010874_030--Hb_003311_050 Hb_009780_090 Hb_009780_090 Hb_010874_030--Hb_009780_090 Hb_002546_040 Hb_002546_040 Hb_010874_030--Hb_002546_040 Hb_000928_150 Hb_000928_150 Hb_010874_030--Hb_000928_150 Hb_010874_030--Hb_094101_010 Hb_003647_010 Hb_003647_010 Hb_010874_030--Hb_003647_010 Hb_026687_010 Hb_026687_010 Hb_005048_060--Hb_026687_010 Hb_000787_040 Hb_000787_040 Hb_005048_060--Hb_000787_040 Hb_005048_060--Hb_001638_080 Hb_033834_050 Hb_033834_050 Hb_005048_060--Hb_033834_050 Hb_000943_060 Hb_000943_060 Hb_005048_060--Hb_000943_060 Hb_011628_020 Hb_011628_020 Hb_005048_060--Hb_011628_020 Hb_004945_020 Hb_004945_020 Hb_001214_150--Hb_004945_020 Hb_002631_220 Hb_002631_220 Hb_001214_150--Hb_002631_220 Hb_005946_120 Hb_005946_120 Hb_001214_150--Hb_005946_120 Hb_101733_040 Hb_101733_040 Hb_001214_150--Hb_101733_040 Hb_171718_020 Hb_171718_020 Hb_001214_150--Hb_171718_020 Hb_025214_090 Hb_025214_090 Hb_001214_150--Hb_025214_090 Hb_015909_010--Hb_005269_030 Hb_001391_120 Hb_001391_120 Hb_015909_010--Hb_001391_120 Hb_015909_010--Hb_001414_130 Hb_001798_020 Hb_001798_020 Hb_015909_010--Hb_001798_020 Hb_000160_240 Hb_000160_240 Hb_015909_010--Hb_000160_240 Hb_005276_170 Hb_005276_170 Hb_015909_010--Hb_005276_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0291408 0.401364 0.0438821 0.0515162 0.193265 0.0609732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.369005 0 0.0853333 0

CAGE analysis