Hb_003311_050

Information

Type -
Description -
Location Contig3311: 82154-83315
Sequence    

Annotation

kegg
ID rcu:RCOM_0862810
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_012078089.1
description PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
swissprot
ID Q8LBL1
description Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2
trembl
ID B9SA74
description Calcium-activated outward-rectifying potassium channel, putative OS=Ricinus communis GN=RCOM_0862810 PE=4 SV=1
Gene Ontology
ID GO:0016021
description two-pore potassium channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003311_050 0.0 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
2 Hb_000928_150 0.1517329161 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009780_090 0.1896789401 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
4 Hb_094101_010 0.1934102112 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
5 Hb_010874_030 0.2262902945 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
6 Hb_003656_120 0.2321163318 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
7 Hb_012423_010 0.2345264003 - - -
8 Hb_001414_130 0.2447703731 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_005052_010 0.2539550475 - - PREDICTED: uncharacterized protein LOC103339315 [Prunus mume]
10 Hb_009848_040 0.2607129493 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
11 Hb_031089_030 0.2623541834 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
12 Hb_011639_010 0.2651529375 - - -
13 Hb_027420_050 0.2656436069 - - -
14 Hb_021583_010 0.2671267901 - - -
15 Hb_004096_080 0.2680184136 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_128376_010 0.2684754143 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_003633_140 0.2687770039 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
18 Hb_000021_100 0.2699352415 - - -
19 Hb_009848_030 0.2713941287 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
20 Hb_026437_010 0.2723935293 - - -

Gene co-expression network

sample Hb_003311_050 Hb_003311_050 Hb_000928_150 Hb_000928_150 Hb_003311_050--Hb_000928_150 Hb_009780_090 Hb_009780_090 Hb_003311_050--Hb_009780_090 Hb_094101_010 Hb_094101_010 Hb_003311_050--Hb_094101_010 Hb_010874_030 Hb_010874_030 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_035662_010 Hb_035662_010 Hb_000928_150--Hb_035662_010 Hb_000928_150--Hb_009780_090 Hb_128376_010 Hb_128376_010 Hb_000928_150--Hb_128376_010 Hb_000928_150--Hb_012423_010 Hb_006269_040 Hb_006269_040 Hb_000928_150--Hb_006269_040 Hb_083569_010 Hb_083569_010 Hb_009780_090--Hb_083569_010 Hb_009780_090--Hb_094101_010 Hb_009780_090--Hb_010874_030 Hb_021583_010 Hb_021583_010 Hb_009780_090--Hb_021583_010 Hb_094101_010--Hb_083569_010 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_094101_010--Hb_021583_010 Hb_094101_010--Hb_000928_150 Hb_002546_040 Hb_002546_040 Hb_010874_030--Hb_002546_040 Hb_010874_030--Hb_000928_150 Hb_010874_030--Hb_094101_010 Hb_003647_010 Hb_003647_010 Hb_010874_030--Hb_003647_010 Hb_009848_030 Hb_009848_030 Hb_003656_120--Hb_009848_030 Hb_000504_090 Hb_000504_090 Hb_003656_120--Hb_000504_090 Hb_005510_010 Hb_005510_010 Hb_003656_120--Hb_005510_010 Hb_001396_260 Hb_001396_260 Hb_003656_120--Hb_001396_260 Hb_011639_010 Hb_011639_010 Hb_003656_120--Hb_011639_010 Hb_000032_310 Hb_000032_310 Hb_003656_120--Hb_000032_310 Hb_009848_040 Hb_009848_040 Hb_012423_010--Hb_009848_040 Hb_000152_670 Hb_000152_670 Hb_012423_010--Hb_000152_670 Hb_003025_050 Hb_003025_050 Hb_012423_010--Hb_003025_050 Hb_167234_010 Hb_167234_010 Hb_012423_010--Hb_167234_010 Hb_002027_380 Hb_002027_380 Hb_012423_010--Hb_002027_380 Hb_000449_050 Hb_000449_050 Hb_012423_010--Hb_000449_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0415478 0.0864799 0.0164286 0.0162056 0.104181 0.114008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0373904 0 0.0600731 0

CAGE analysis