Hb_009780_090

Information

Type -
Description -
Location Contig9780: 105279-110753
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08990g
description POPTRDRAFT_759028; pentatricopeptide repeat-containing family protein
nr
ID XP_012077805.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
swissprot
ID Q3ECH5
description Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=3 SV=1
trembl
ID A0A067KN07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13439 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64252: 105125-105557 , PASA_asmbl_64255: 111209-111611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
2 Hb_003311_050 0.1896789401 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
3 Hb_000928_150 0.210017665 - - conserved hypothetical protein [Ricinus communis]
4 Hb_083569_010 0.2229930951 - - -
5 Hb_094101_010 0.2279348855 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
6 Hb_010874_030 0.2459105802 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
7 Hb_021583_010 0.2590662878 - - -
8 Hb_035662_010 0.2645199241 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004129_120 0.2691544619 - - -
10 Hb_004453_010 0.2735847637 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000009_590 0.287341813 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
12 Hb_004342_030 0.2876046173 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_000021_100 0.2877539728 - - -
14 Hb_019282_010 0.289968379 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
15 Hb_012753_020 0.2915565341 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001754_170 0.2959873902 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
17 Hb_000953_060 0.3011653441 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
18 Hb_000261_260 0.3020188566 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
19 Hb_000236_300 0.3026061564 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
20 Hb_000025_310 0.3043542192 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009780_090 Hb_009780_090 Hb_003311_050 Hb_003311_050 Hb_009780_090--Hb_003311_050 Hb_000928_150 Hb_000928_150 Hb_009780_090--Hb_000928_150 Hb_083569_010 Hb_083569_010 Hb_009780_090--Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_009780_090--Hb_094101_010 Hb_010874_030 Hb_010874_030 Hb_009780_090--Hb_010874_030 Hb_021583_010 Hb_021583_010 Hb_009780_090--Hb_021583_010 Hb_003311_050--Hb_000928_150 Hb_003311_050--Hb_094101_010 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_035662_010 Hb_035662_010 Hb_000928_150--Hb_035662_010 Hb_128376_010 Hb_128376_010 Hb_000928_150--Hb_128376_010 Hb_000928_150--Hb_012423_010 Hb_006269_040 Hb_006269_040 Hb_000928_150--Hb_006269_040 Hb_083569_010--Hb_094101_010 Hb_083569_010--Hb_021583_010 Hb_000563_220 Hb_000563_220 Hb_083569_010--Hb_000563_220 Hb_003609_010 Hb_003609_010 Hb_083569_010--Hb_003609_010 Hb_083569_010--Hb_003311_050 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_094101_010--Hb_021583_010 Hb_094101_010--Hb_000928_150 Hb_002546_040 Hb_002546_040 Hb_010874_030--Hb_002546_040 Hb_010874_030--Hb_000928_150 Hb_010874_030--Hb_094101_010 Hb_003647_010 Hb_003647_010 Hb_010874_030--Hb_003647_010 Hb_021583_010--Hb_003311_050 Hb_019282_010 Hb_019282_010 Hb_021583_010--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_021583_010--Hb_001427_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150738 0.112943 0.0180839 0.0811321 0.327582 0.367204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.260893 0 0.175173 0

CAGE analysis