Hb_001427_180

Information

Type -
Description -
Location Contig1427: 157371-157610
Sequence    

Annotation

kegg
ID rcu:RCOM_0663350
description hypothetical protein
nr
ID XP_012076802.1
description PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
swissprot
ID Q9M0E1
description F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana GN=At4g29420 PE=2 SV=1
trembl
ID A0A067KC23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07322 PE=4 SV=1
Gene Ontology
ID GO:0005840
description f-box lrr-repeat protein at4g29420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11326: 156931-157417
cDNA
(Sanger)
(ID:Location)		 028_F08r.ab1: 154262-156670

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_180 0.0 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
2 Hb_001513_020 0.1930403753 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
3 Hb_000352_130 0.1943042663 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
4 Hb_019282_010 0.1961856251 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
5 Hb_176117_010 0.2067411671 - - Cold-inducible RNA-binding protein [Morus notabilis]
6 Hb_005016_150 0.2085137062 - - -
7 Hb_002904_090 0.2098429337 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
8 Hb_000213_060 0.2102000998 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
9 Hb_000200_040 0.2111427944 - - -
10 Hb_003376_170 0.2137144196 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
11 Hb_001477_010 0.2141345618 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
12 Hb_012807_080 0.2145055986 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
13 Hb_004669_040 0.2213909652 - - ATPase inhibitor, putative [Ricinus communis]
14 Hb_006901_040 0.2224263311 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000025_760 0.2252148397 - - -
16 Hb_000953_060 0.2295332451 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
17 Hb_181320_010 0.2295997518 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
18 Hb_000771_160 0.2309402355 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
19 Hb_064201_010 0.2313794912 - - hypothetical protein RCOM_1685970 [Ricinus communis]
20 Hb_005305_060 0.2321330594 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]

Gene co-expression network

sample Hb_001427_180 Hb_001427_180 Hb_001513_020 Hb_001513_020 Hb_001427_180--Hb_001513_020 Hb_000352_130 Hb_000352_130 Hb_001427_180--Hb_000352_130 Hb_019282_010 Hb_019282_010 Hb_001427_180--Hb_019282_010 Hb_176117_010 Hb_176117_010 Hb_001427_180--Hb_176117_010 Hb_005016_150 Hb_005016_150 Hb_001427_180--Hb_005016_150 Hb_002904_090 Hb_002904_090 Hb_001427_180--Hb_002904_090 Hb_001477_010 Hb_001477_010 Hb_001513_020--Hb_001477_010 Hb_001675_060 Hb_001675_060 Hb_001513_020--Hb_001675_060 Hb_001513_020--Hb_005016_150 Hb_001712_050 Hb_001712_050 Hb_001513_020--Hb_001712_050 Hb_000256_270 Hb_000256_270 Hb_001513_020--Hb_000256_270 Hb_001668_030 Hb_001668_030 Hb_001513_020--Hb_001668_030 Hb_064201_010 Hb_064201_010 Hb_000352_130--Hb_064201_010 Hb_004206_040 Hb_004206_040 Hb_000352_130--Hb_004206_040 Hb_001146_070 Hb_001146_070 Hb_000352_130--Hb_001146_070 Hb_000185_090 Hb_000185_090 Hb_000352_130--Hb_000185_090 Hb_005271_030 Hb_005271_030 Hb_000352_130--Hb_005271_030 Hb_000213_060 Hb_000213_060 Hb_000352_130--Hb_000213_060 Hb_058381_010 Hb_058381_010 Hb_019282_010--Hb_058381_010 Hb_000200_040 Hb_000200_040 Hb_019282_010--Hb_000200_040 Hb_012807_080 Hb_012807_080 Hb_019282_010--Hb_012807_080 Hb_002411_130 Hb_002411_130 Hb_019282_010--Hb_002411_130 Hb_000159_110 Hb_000159_110 Hb_019282_010--Hb_000159_110 Hb_003376_070 Hb_003376_070 Hb_019282_010--Hb_003376_070 Hb_181320_010 Hb_181320_010 Hb_176117_010--Hb_181320_010 Hb_176117_010--Hb_005016_150 Hb_000270_500 Hb_000270_500 Hb_176117_010--Hb_000270_500 Hb_144898_010 Hb_144898_010 Hb_176117_010--Hb_144898_010 Hb_176117_010--Hb_000200_040 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010 Hb_005016_150--Hb_001675_060 Hb_005016_150--Hb_000213_060 Hb_005016_150--Hb_001477_010 Hb_005016_150--Hb_181320_010 Hb_003226_170 Hb_003226_170 Hb_005016_150--Hb_003226_170 Hb_005016_150--Hb_000256_270 Hb_002904_090--Hb_019282_010 Hb_002904_090--Hb_176117_010 Hb_000014_130 Hb_000014_130 Hb_002904_090--Hb_000014_130 Hb_000331_500 Hb_000331_500 Hb_002904_090--Hb_000331_500 Hb_041237_010 Hb_041237_010 Hb_002904_090--Hb_041237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0964 8.54323 0.737015 0 30.2659 57.5451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4493 11.3853 2.11061 3.21204 0

CAGE analysis