Hb_041237_010

Information

Type -
Description -
Location Contig41237: 70-216
Sequence    

Annotation

kegg
ID rcu:RCOM_0585740
description hypothetical protein
nr
ID XP_002522975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAF6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0585740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041237_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003398_010 0.1145231218 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
3 Hb_000014_130 0.1416625633 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
4 Hb_000617_040 0.1655462123 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
5 Hb_000413_170 0.175325433 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
6 Hb_007978_020 0.1783872307 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
7 Hb_003299_080 0.1895862004 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
8 Hb_001247_140 0.189602679 - - -
9 Hb_031089_030 0.1953411929 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
10 Hb_004631_160 0.1992975038 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
11 Hb_001907_060 0.2002146934 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
12 Hb_181975_010 0.2026515318 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
13 Hb_002609_010 0.2033485236 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
14 Hb_001158_180 0.204519263 - - -
15 Hb_000792_110 0.2082197745 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
16 Hb_000212_130 0.2133514731 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003492_010 0.2151141446 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
18 Hb_000307_250 0.2183693607 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
19 Hb_004206_040 0.2210812019 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001935_190 0.2249107573 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]

Gene co-expression network

sample Hb_041237_010 Hb_041237_010 Hb_003398_010 Hb_003398_010 Hb_041237_010--Hb_003398_010 Hb_000014_130 Hb_000014_130 Hb_041237_010--Hb_000014_130 Hb_000617_040 Hb_000617_040 Hb_041237_010--Hb_000617_040 Hb_000413_170 Hb_000413_170 Hb_041237_010--Hb_000413_170 Hb_007978_020 Hb_007978_020 Hb_041237_010--Hb_007978_020 Hb_003299_080 Hb_003299_080 Hb_041237_010--Hb_003299_080 Hb_003398_010--Hb_000617_040 Hb_004631_160 Hb_004631_160 Hb_003398_010--Hb_004631_160 Hb_003398_010--Hb_003299_080 Hb_000212_130 Hb_000212_130 Hb_003398_010--Hb_000212_130 Hb_031089_030 Hb_031089_030 Hb_003398_010--Hb_031089_030 Hb_000014_130--Hb_007978_020 Hb_003772_020 Hb_003772_020 Hb_000014_130--Hb_003772_020 Hb_002904_090 Hb_002904_090 Hb_000014_130--Hb_002904_090 Hb_032018_010 Hb_032018_010 Hb_000014_130--Hb_032018_010 Hb_000014_130--Hb_003398_010 Hb_001247_140 Hb_001247_140 Hb_000617_040--Hb_001247_140 Hb_000617_040--Hb_031089_030 Hb_000617_040--Hb_004631_160 Hb_007257_050 Hb_007257_050 Hb_000617_040--Hb_007257_050 Hb_002609_010 Hb_002609_010 Hb_000413_170--Hb_002609_010 Hb_001907_060 Hb_001907_060 Hb_000413_170--Hb_001907_060 Hb_007348_030 Hb_007348_030 Hb_000413_170--Hb_007348_030 Hb_004225_130 Hb_004225_130 Hb_000413_170--Hb_004225_130 Hb_148209_020 Hb_148209_020 Hb_000413_170--Hb_148209_020 Hb_010883_080 Hb_010883_080 Hb_000413_170--Hb_010883_080 Hb_181975_010 Hb_181975_010 Hb_007978_020--Hb_181975_010 Hb_000574_150 Hb_000574_150 Hb_007978_020--Hb_000574_150 Hb_007978_020--Hb_000617_040 Hb_007978_020--Hb_003398_010 Hb_003299_080--Hb_001247_140 Hb_013753_010 Hb_013753_010 Hb_003299_080--Hb_013753_010 Hb_003299_080--Hb_031089_030 Hb_005038_020 Hb_005038_020 Hb_003299_080--Hb_005038_020 Hb_003299_080--Hb_002609_010 Hb_002078_420 Hb_002078_420 Hb_003299_080--Hb_002078_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1228.2 1315.98 156.696 94.8897 1182.86 2324.12
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.425 115.7 11.4366 93.7262 9.05106

CAGE analysis