Hb_010874_030

Information

Type transcription factor
Description TF Family: M-type
Location Contig10874: 36371-36858
Sequence    

Annotation

kegg
ID cit:102617847
description agamous-like MADS-box protein AGL80-like
nr
ID KDP35104.1
description hypothetical protein JCGZ_10946 [Jatropha curcas]
swissprot
ID Q9FJK3
description Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1
trembl
ID A0A067KTD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10946 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010874_030 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
2 Hb_003311_050 0.2262902945 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
3 Hb_009780_090 0.2459105802 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
4 Hb_002546_040 0.2461972099 - - hypothetical protein CISIN_1g005599mg [Citrus sinensis]
5 Hb_000928_150 0.2554116927 - - conserved hypothetical protein [Ricinus communis]
6 Hb_094101_010 0.2627090111 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
7 Hb_003647_010 0.2797560127 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
8 Hb_004088_060 0.2800594107 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
9 Hb_000670_030 0.293277872 - - -
10 Hb_003656_120 0.3065041944 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
11 Hb_001414_130 0.3112834556 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_004449_050 0.3168635558 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
13 Hb_021583_010 0.3174102545 - - -
14 Hb_002073_040 0.3217325273 - - conserved hypothetical protein [Ricinus communis]
15 Hb_083569_010 0.3237856896 - - -
16 Hb_027420_050 0.3239767494 - - -
17 Hb_179679_010 0.3250535616 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
18 Hb_063716_070 0.3256487995 - - hypothetical protein PRUPE_ppa020565mg [Prunus persica]
19 Hb_012423_010 0.3265919408 - - -
20 Hb_019282_010 0.3276772483 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

Gene co-expression network

sample Hb_010874_030 Hb_010874_030 Hb_003311_050 Hb_003311_050 Hb_010874_030--Hb_003311_050 Hb_009780_090 Hb_009780_090 Hb_010874_030--Hb_009780_090 Hb_002546_040 Hb_002546_040 Hb_010874_030--Hb_002546_040 Hb_000928_150 Hb_000928_150 Hb_010874_030--Hb_000928_150 Hb_094101_010 Hb_094101_010 Hb_010874_030--Hb_094101_010 Hb_003647_010 Hb_003647_010 Hb_010874_030--Hb_003647_010 Hb_003311_050--Hb_000928_150 Hb_003311_050--Hb_009780_090 Hb_003311_050--Hb_094101_010 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_009780_090--Hb_000928_150 Hb_083569_010 Hb_083569_010 Hb_009780_090--Hb_083569_010 Hb_009780_090--Hb_094101_010 Hb_021583_010 Hb_021583_010 Hb_009780_090--Hb_021583_010 Hb_004361_010 Hb_004361_010 Hb_002546_040--Hb_004361_010 Hb_000733_270 Hb_000733_270 Hb_002546_040--Hb_000733_270 Hb_009848_020 Hb_009848_020 Hb_002546_040--Hb_009848_020 Hb_000787_190 Hb_000787_190 Hb_002546_040--Hb_000787_190 Hb_029977_050 Hb_029977_050 Hb_002546_040--Hb_029977_050 Hb_035662_010 Hb_035662_010 Hb_000928_150--Hb_035662_010 Hb_128376_010 Hb_128376_010 Hb_000928_150--Hb_128376_010 Hb_000928_150--Hb_012423_010 Hb_006269_040 Hb_006269_040 Hb_000928_150--Hb_006269_040 Hb_094101_010--Hb_083569_010 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_094101_010--Hb_021583_010 Hb_094101_010--Hb_000928_150 Hb_120384_010 Hb_120384_010 Hb_003647_010--Hb_120384_010 Hb_028795_010 Hb_028795_010 Hb_003647_010--Hb_028795_010 Hb_001301_230 Hb_001301_230 Hb_003647_010--Hb_001301_230 Hb_000808_070 Hb_000808_070 Hb_003647_010--Hb_000808_070 Hb_003633_140 Hb_003633_140 Hb_003647_010--Hb_003633_140 Hb_002073_040 Hb_002073_040 Hb_003647_010--Hb_002073_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0.485742 0 0.144266 0.398907 0.371769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.301457 0 0.12869 0

CAGE analysis