Hb_004361_010

Information

Type -
Description -
Location Contig4361: 28949-30472
Sequence    

Annotation

kegg
ID cit:102629728
description uncharacterized LOC102629728
nr
ID KDO37843.1
description hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067D4V7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047084mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004361_010 0.0 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
2 Hb_111985_010 0.2316951366 - - -
3 Hb_002546_040 0.2369467205 - - hypothetical protein CISIN_1g005599mg [Citrus sinensis]
4 Hb_000733_270 0.2747368899 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
5 Hb_009848_020 0.2851821764 - - hypothetical protein VITISV_026702 [Vitis vinifera]
6 Hb_084470_010 0.287418387 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_000679_200 0.2950377529 - - EIN3-binding F box protein 1 [Theobroma cacao]
8 Hb_176685_010 0.2979791999 - - receptor-type protein kinase LRK1-like [Oryza sativa Japonica Group]
9 Hb_133127_010 0.3073391519 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_029977_050 0.3189592024 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
11 Hb_007163_140 0.3200228866 transcription factor TF Family: bHLH hypothetical protein JCGZ_12606 [Jatropha curcas]
12 Hb_000565_010 0.3248390537 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
13 Hb_011382_050 0.3293256408 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
14 Hb_000130_060 0.3303803125 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
15 Hb_001810_020 0.3318558319 - - -
16 Hb_007785_010 0.3322045804 - - glutathione peroxidase, putative [Ricinus communis]
17 Hb_020581_030 0.3323731088 - - -
18 Hb_026337_010 0.3333903444 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
19 Hb_004724_120 0.3362950234 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
20 Hb_101089_010 0.3363065484 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_004361_010 Hb_004361_010 Hb_111985_010 Hb_111985_010 Hb_004361_010--Hb_111985_010 Hb_002546_040 Hb_002546_040 Hb_004361_010--Hb_002546_040 Hb_000733_270 Hb_000733_270 Hb_004361_010--Hb_000733_270 Hb_009848_020 Hb_009848_020 Hb_004361_010--Hb_009848_020 Hb_084470_010 Hb_084470_010 Hb_004361_010--Hb_084470_010 Hb_000679_200 Hb_000679_200 Hb_004361_010--Hb_000679_200 Hb_000836_100 Hb_000836_100 Hb_111985_010--Hb_000836_100 Hb_176685_010 Hb_176685_010 Hb_111985_010--Hb_176685_010 Hb_174547_010 Hb_174547_010 Hb_111985_010--Hb_174547_010 Hb_003266_040 Hb_003266_040 Hb_111985_010--Hb_003266_040 Hb_000869_060 Hb_000869_060 Hb_111985_010--Hb_000869_060 Hb_010874_030 Hb_010874_030 Hb_002546_040--Hb_010874_030 Hb_002546_040--Hb_000733_270 Hb_002546_040--Hb_009848_020 Hb_000787_190 Hb_000787_190 Hb_002546_040--Hb_000787_190 Hb_029977_050 Hb_029977_050 Hb_002546_040--Hb_029977_050 Hb_004724_120 Hb_004724_120 Hb_000733_270--Hb_004724_120 Hb_000733_270--Hb_084470_010 Hb_002235_140 Hb_002235_140 Hb_000733_270--Hb_002235_140 Hb_000021_100 Hb_000021_100 Hb_000733_270--Hb_000021_100 Hb_007785_010 Hb_007785_010 Hb_000733_270--Hb_007785_010 Hb_003073_170 Hb_003073_170 Hb_000733_270--Hb_003073_170 Hb_009848_020--Hb_084470_010 Hb_003854_020 Hb_003854_020 Hb_009848_020--Hb_003854_020 Hb_059641_010 Hb_059641_010 Hb_009848_020--Hb_059641_010 Hb_000123_030 Hb_000123_030 Hb_009848_020--Hb_000123_030 Hb_144550_020 Hb_144550_020 Hb_009848_020--Hb_144550_020 Hb_000330_160 Hb_000330_160 Hb_009848_020--Hb_000330_160 Hb_003157_030 Hb_003157_030 Hb_084470_010--Hb_003157_030 Hb_141212_010 Hb_141212_010 Hb_084470_010--Hb_141212_010 Hb_084470_010--Hb_003854_020 Hb_018118_020 Hb_018118_020 Hb_084470_010--Hb_018118_020 Hb_060391_010 Hb_060391_010 Hb_000679_200--Hb_060391_010 Hb_000098_300 Hb_000098_300 Hb_000679_200--Hb_000098_300 Hb_026337_010 Hb_026337_010 Hb_000679_200--Hb_026337_010 Hb_007333_040 Hb_007333_040 Hb_000679_200--Hb_007333_040 Hb_000679_200--Hb_004724_120 Hb_003972_040 Hb_003972_040 Hb_000679_200--Hb_003972_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0665618 0 0.0578838 0.0297867 0.0904998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0639009 0

CAGE analysis