Hb_003266_040

Information

Type -
Description -
Location Contig3266: 33882-34112
Sequence    

Annotation

kegg
ID rcu:RCOM_0558710
description hypothetical protein
nr
ID XP_012092266.1
description PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21948 PE=4 SV=1
Gene Ontology
ID GO:0031359
description kda chloroplast outer envelope membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34348: 34846-39030
cDNA
(Sanger)
(ID:Location)		 005_O04.ab1: 34955-39011 , 037_G13.ab1: 34957-39011

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_040 0.0 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
2 Hb_179812_010 0.1993037001 - - TdcA1-ORF1-ORF2 [Daucus carota]
3 Hb_007083_020 0.2285551777 - - hypothetical protein F775_15403 [Aegilops tauschii]
4 Hb_005542_090 0.2289497978 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
5 Hb_141132_010 0.2292448713 - - Hsc70-interacting protein, putative [Ricinus communis]
6 Hb_121467_010 0.2354840967 - - tubulin-specific chaperone E, putative [Ricinus communis]
7 Hb_106415_010 0.242486637 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
8 Hb_178620_010 0.2470046584 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
9 Hb_019053_010 0.252820467 - - -
10 Hb_183522_010 0.2529834031 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_004195_230 0.2545364487 - - conserved hypothetical protein [Ricinus communis]
12 Hb_088428_010 0.2561401396 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
13 Hb_033385_010 0.256508894 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
14 Hb_001252_200 0.2574494364 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
15 Hb_009119_020 0.2580796112 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
16 Hb_000130_190 0.2586721108 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
17 Hb_006629_010 0.2590711619 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
18 Hb_001195_160 0.2611379443 - - -
19 Hb_010964_020 0.2637396816 - - RNA helicase [Arabidopsis thaliana]
20 Hb_116596_010 0.2663127805 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_003266_040 Hb_003266_040 Hb_179812_010 Hb_179812_010 Hb_003266_040--Hb_179812_010 Hb_007083_020 Hb_007083_020 Hb_003266_040--Hb_007083_020 Hb_005542_090 Hb_005542_090 Hb_003266_040--Hb_005542_090 Hb_141132_010 Hb_141132_010 Hb_003266_040--Hb_141132_010 Hb_121467_010 Hb_121467_010 Hb_003266_040--Hb_121467_010 Hb_106415_010 Hb_106415_010 Hb_003266_040--Hb_106415_010 Hb_179812_010--Hb_005542_090 Hb_004195_230 Hb_004195_230 Hb_179812_010--Hb_004195_230 Hb_002388_010 Hb_002388_010 Hb_179812_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_179812_010--Hb_002687_080 Hb_178620_010 Hb_178620_010 Hb_179812_010--Hb_178620_010 Hb_150766_020 Hb_150766_020 Hb_179812_010--Hb_150766_020 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_068014_010 Hb_068014_010 Hb_007083_020--Hb_068014_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010 Hb_007083_020--Hb_005542_090 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460 Hb_003683_180 Hb_003683_180 Hb_141132_010--Hb_003683_180 Hb_002498_050 Hb_002498_050 Hb_141132_010--Hb_002498_050 Hb_000212_320 Hb_000212_320 Hb_141132_010--Hb_000212_320 Hb_009119_040 Hb_009119_040 Hb_141132_010--Hb_009119_040 Hb_028707_080 Hb_028707_080 Hb_141132_010--Hb_028707_080 Hb_000130_190 Hb_000130_190 Hb_141132_010--Hb_000130_190 Hb_088428_010 Hb_088428_010 Hb_121467_010--Hb_088428_010 Hb_000159_110 Hb_000159_110 Hb_121467_010--Hb_000159_110 Hb_009119_030 Hb_009119_030 Hb_121467_010--Hb_009119_030 Hb_002411_130 Hb_002411_130 Hb_121467_010--Hb_002411_130 Hb_001767_120 Hb_001767_120 Hb_121467_010--Hb_001767_120 Hb_070469_010 Hb_070469_010 Hb_121467_010--Hb_070469_010 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01071 0.891185 0.855965 8.04662 5.72562 8.71916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63407 1.30369 0 2.76039 0

CAGE analysis