Hb_000212_320

Information

Type -
Description -
Location Contig212: 329710-331306
Sequence    

Annotation

kegg
ID rcu:RCOM_1077750
description hypothetical protein
nr
ID XP_012085784.1
description PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18043 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21969: 329621-329987 , PASA_asmbl_21970: 329716-331089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_320 0.0 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
2 Hb_008103_040 0.0919347604 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
3 Hb_000933_020 0.0946680172 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007426_150 0.0983133982 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
5 Hb_000608_320 0.1086146843 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
6 Hb_132697_010 0.1096794434 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001310_110 0.1103011122 - - unnamed protein product [Coffea canephora]
8 Hb_002783_240 0.1120416422 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
9 Hb_005211_100 0.1122445743 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
10 Hb_007059_010 0.1164405027 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
11 Hb_000116_500 0.1169005058 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
12 Hb_017700_010 0.1177202434 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
13 Hb_005170_040 0.1205608953 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
14 Hb_000146_050 0.1214095822 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
15 Hb_021297_050 0.1232231787 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
16 Hb_000123_090 0.1235092416 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
17 Hb_009529_030 0.1250357327 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
18 Hb_001882_050 0.1255326011 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
19 Hb_001195_560 0.1258413436 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
20 Hb_000103_310 0.127119937 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]

Gene co-expression network

sample Hb_000212_320 Hb_000212_320 Hb_008103_040 Hb_008103_040 Hb_000212_320--Hb_008103_040 Hb_000933_020 Hb_000933_020 Hb_000212_320--Hb_000933_020 Hb_007426_150 Hb_007426_150 Hb_000212_320--Hb_007426_150 Hb_000608_320 Hb_000608_320 Hb_000212_320--Hb_000608_320 Hb_132697_010 Hb_132697_010 Hb_000212_320--Hb_132697_010 Hb_001310_110 Hb_001310_110 Hb_000212_320--Hb_001310_110 Hb_001541_090 Hb_001541_090 Hb_008103_040--Hb_001541_090 Hb_009529_030 Hb_009529_030 Hb_008103_040--Hb_009529_030 Hb_005147_060 Hb_005147_060 Hb_008103_040--Hb_005147_060 Hb_001341_120 Hb_001341_120 Hb_008103_040--Hb_001341_120 Hb_008103_040--Hb_007426_150 Hb_003605_130 Hb_003605_130 Hb_000933_020--Hb_003605_130 Hb_000123_090 Hb_000123_090 Hb_000933_020--Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000933_020--Hb_008864_110 Hb_000933_020--Hb_007426_150 Hb_000002_490 Hb_000002_490 Hb_000933_020--Hb_000002_490 Hb_001195_560 Hb_001195_560 Hb_000933_020--Hb_001195_560 Hb_007426_150--Hb_001195_560 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_011618_080 Hb_011618_080 Hb_007426_150--Hb_011618_080 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_000429_220 Hb_000429_220 Hb_007426_150--Hb_000429_220 Hb_002027_290 Hb_002027_290 Hb_000608_320--Hb_002027_290 Hb_000318_290 Hb_000318_290 Hb_000608_320--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_000608_320--Hb_005170_040 Hb_003777_310 Hb_003777_310 Hb_000608_320--Hb_003777_310 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_002811_060 Hb_002811_060 Hb_000608_320--Hb_002811_060 Hb_017987_020 Hb_017987_020 Hb_132697_010--Hb_017987_020 Hb_000787_090 Hb_000787_090 Hb_132697_010--Hb_000787_090 Hb_002431_020 Hb_002431_020 Hb_132697_010--Hb_002431_020 Hb_075481_030 Hb_075481_030 Hb_132697_010--Hb_075481_030 Hb_132697_010--Hb_000933_020 Hb_000861_070 Hb_000861_070 Hb_132697_010--Hb_000861_070 Hb_001310_110--Hb_000933_020 Hb_009775_020 Hb_009775_020 Hb_001310_110--Hb_009775_020 Hb_001310_110--Hb_000123_090 Hb_000592_080 Hb_000592_080 Hb_001310_110--Hb_000592_080 Hb_000025_050 Hb_000025_050 Hb_001310_110--Hb_000025_050 Hb_000959_270 Hb_000959_270 Hb_001310_110--Hb_000959_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2505 12.6662 8.45952 25.4191 32.6907 23.9491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.34766 10.8268 13.4571 11.0755 8.006

CAGE analysis