Hb_000787_190

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig787: 196430-201833
Sequence    

Annotation

kegg
ID rcu:RCOM_0182670
description multidrug resistance protein 1, 2, putative (EC:3.6.3.27 3.6.3.44)
nr
ID XP_012070733.1
description PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
swissprot
ID Q9LHD1
description ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=3 SV=1
trembl
ID A0A067KS52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00808 PE=3 SV=1
Gene Ontology
ID GO:0016021
description multidrug resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_190 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
2 Hb_000022_180 0.1548427202 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
3 Hb_005203_020 0.1638009572 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
4 Hb_004108_170 0.1759433221 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000123_330 0.1783212461 - - hypothetical protein M569_14136, partial [Genlisea aurea]
6 Hb_029977_050 0.1792495766 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
7 Hb_003155_020 0.1856738358 - - Rpp4C3 [Medicago truncatula]
8 Hb_000120_970 0.18774705 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
9 Hb_063480_020 0.1910870644 - - unnamed protein product [Vitis vinifera]
10 Hb_001544_080 0.1915811611 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
11 Hb_006026_010 0.1929383887 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
12 Hb_080451_010 0.1945852012 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
13 Hb_011716_110 0.1948146415 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_000261_190 0.195704792 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
15 Hb_007785_010 0.1984191031 - - glutathione peroxidase, putative [Ricinus communis]
16 Hb_000789_240 0.198448638 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
17 Hb_020178_060 0.2001136494 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
18 Hb_000538_190 0.2003374813 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
19 Hb_001369_770 0.2013298336 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
20 Hb_011716_090 0.2034465349 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000787_190 Hb_000787_190 Hb_000022_180 Hb_000022_180 Hb_000787_190--Hb_000022_180 Hb_005203_020 Hb_005203_020 Hb_000787_190--Hb_005203_020 Hb_004108_170 Hb_004108_170 Hb_000787_190--Hb_004108_170 Hb_000123_330 Hb_000123_330 Hb_000787_190--Hb_000123_330 Hb_029977_050 Hb_029977_050 Hb_000787_190--Hb_029977_050 Hb_003155_020 Hb_003155_020 Hb_000787_190--Hb_003155_020 Hb_000645_240 Hb_000645_240 Hb_000022_180--Hb_000645_240 Hb_000789_240 Hb_000789_240 Hb_000022_180--Hb_000789_240 Hb_011861_080 Hb_011861_080 Hb_000022_180--Hb_011861_080 Hb_000866_370 Hb_000866_370 Hb_000022_180--Hb_000866_370 Hb_000866_090 Hb_000866_090 Hb_000022_180--Hb_000866_090 Hb_000022_180--Hb_004108_170 Hb_001369_770 Hb_001369_770 Hb_005203_020--Hb_001369_770 Hb_127599_010 Hb_127599_010 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040 Hb_000010_350 Hb_000010_350 Hb_004108_170--Hb_000010_350 Hb_003060_090 Hb_003060_090 Hb_004108_170--Hb_003060_090 Hb_000062_080 Hb_000062_080 Hb_004108_170--Hb_000062_080 Hb_004108_170--Hb_127599_010 Hb_004108_170--Hb_011861_080 Hb_004108_170--Hb_000363_370 Hb_006683_040 Hb_006683_040 Hb_000123_330--Hb_006683_040 Hb_144744_010 Hb_144744_010 Hb_000123_330--Hb_144744_010 Hb_007894_130 Hb_007894_130 Hb_000123_330--Hb_007894_130 Hb_001055_030 Hb_001055_030 Hb_000123_330--Hb_001055_030 Hb_000123_330--Hb_127599_010 Hb_001278_040 Hb_001278_040 Hb_029977_050--Hb_001278_040 Hb_001544_080 Hb_001544_080 Hb_029977_050--Hb_001544_080 Hb_080451_010 Hb_080451_010 Hb_029977_050--Hb_080451_010 Hb_000120_970 Hb_000120_970 Hb_029977_050--Hb_000120_970 Hb_003371_230 Hb_003371_230 Hb_029977_050--Hb_003371_230 Hb_009897_010 Hb_009897_010 Hb_003155_020--Hb_009897_010 Hb_000123_350 Hb_000123_350 Hb_003155_020--Hb_000123_350 Hb_003155_020--Hb_005203_020 Hb_001865_060 Hb_001865_060 Hb_003155_020--Hb_001865_060 Hb_011716_110 Hb_011716_110 Hb_003155_020--Hb_011716_110 Hb_001907_100 Hb_001907_100 Hb_003155_020--Hb_001907_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0213576 0.334265 0.0341372 0.103869 0.0888503 0.155703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.03427 0.0359588 0.0172544 0.181631 0.0192509

CAGE analysis