Hb_003371_230

Information

Type -
Description -
Location Contig3371: 186209-188531
Sequence    

Annotation

kegg
ID -
description -
nr
ID KKX20697.1
description lactase-like b precursor [Scleropages formosus]
swissprot
ID -
description -
trembl
ID A0A0E0PBJ2
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_230 0.0 - - lactase-like b precursor [Scleropages formosus]
2 Hb_002693_060 0.1365560434 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_027760_070 0.1538697306 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
4 Hb_003211_010 0.1545526095 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
5 Hb_001278_040 0.1586844244 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
6 Hb_000457_140 0.1618583427 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
7 Hb_001481_160 0.1640849904 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
8 Hb_002876_290 0.1646737237 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
9 Hb_000836_550 0.1677253145 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
10 Hb_008143_070 0.1689972212 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
11 Hb_006588_150 0.170198559 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
12 Hb_006663_030 0.1707067806 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_001369_440 0.1736584724 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
14 Hb_000155_110 0.1738440676 - - Auxin response factor, putative [Ricinus communis]
15 Hb_011716_090 0.1744066718 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
16 Hb_117038_010 0.1783594079 - - cysteine protease [Hevea brasiliensis]
17 Hb_029977_050 0.1788657983 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
18 Hb_131035_010 0.1790995126 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000359_140 0.1793550543 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
20 Hb_008246_020 0.1794383239 - - amidophosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003371_230 Hb_003371_230 Hb_002693_060 Hb_002693_060 Hb_003371_230--Hb_002693_060 Hb_027760_070 Hb_027760_070 Hb_003371_230--Hb_027760_070 Hb_003211_010 Hb_003211_010 Hb_003371_230--Hb_003211_010 Hb_001278_040 Hb_001278_040 Hb_003371_230--Hb_001278_040 Hb_000457_140 Hb_000457_140 Hb_003371_230--Hb_000457_140 Hb_001481_160 Hb_001481_160 Hb_003371_230--Hb_001481_160 Hb_001269_140 Hb_001269_140 Hb_002693_060--Hb_001269_140 Hb_001105_160 Hb_001105_160 Hb_002693_060--Hb_001105_160 Hb_011716_090 Hb_011716_090 Hb_002693_060--Hb_011716_090 Hb_000140_480 Hb_000140_480 Hb_002693_060--Hb_000140_480 Hb_001427_070 Hb_001427_070 Hb_002693_060--Hb_001427_070 Hb_083799_010 Hb_083799_010 Hb_002693_060--Hb_083799_010 Hb_030736_070 Hb_030736_070 Hb_027760_070--Hb_030736_070 Hb_000139_130 Hb_000139_130 Hb_027760_070--Hb_000139_130 Hb_027760_070--Hb_000457_140 Hb_000359_140 Hb_000359_140 Hb_027760_070--Hb_000359_140 Hb_146081_010 Hb_146081_010 Hb_027760_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_027760_070--Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_003211_010--Hb_001055_030 Hb_167234_010 Hb_167234_010 Hb_003211_010--Hb_167234_010 Hb_003211_010--Hb_011716_090 Hb_003211_010--Hb_008143_070 Hb_000856_180 Hb_000856_180 Hb_003211_010--Hb_000856_180 Hb_006588_150 Hb_006588_150 Hb_003211_010--Hb_006588_150 Hb_080451_010 Hb_080451_010 Hb_001278_040--Hb_080451_010 Hb_029977_050 Hb_029977_050 Hb_001278_040--Hb_029977_050 Hb_001278_040--Hb_000457_140 Hb_004162_120 Hb_004162_120 Hb_001278_040--Hb_004162_120 Hb_011716_110 Hb_011716_110 Hb_001278_040--Hb_011716_110 Hb_000457_140--Hb_030736_070 Hb_001205_110 Hb_001205_110 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_000457_140--Hb_008143_070 Hb_000457_140--Hb_001055_030 Hb_162150_010 Hb_162150_010 Hb_001481_160--Hb_162150_010 Hb_001481_160--Hb_002693_060 Hb_006698_040 Hb_006698_040 Hb_001481_160--Hb_006698_040 Hb_001160_070 Hb_001160_070 Hb_001481_160--Hb_001160_070 Hb_008221_170 Hb_008221_170 Hb_001481_160--Hb_008221_170 Hb_001481_160--Hb_000856_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245666 0.413246 0.0319835 0.584759 0.168635 0.355901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146729 0.115405 0.070937 0.494699 0.0788552

CAGE analysis