Hb_000789_240

Information

Type -
Description -
Location Contig789: 179688-183822
Sequence    

Annotation

kegg
ID rcu:RCOM_1048800
description gamma glutamyl transpeptidases, putative (EC:2.3.2.2)
nr
ID XP_002514187.1
description gamma glutamyl transpeptidases, putative [Ricinus communis]
swissprot
ID Q9M0G0
description Gamma-glutamyltranspeptidase 3 OS=Arabidopsis thaliana GN=GGT3 PE=2 SV=1
trembl
ID B9RKE3
description Gamma glutamyl transpeptidases, putative OS=Ricinus communis GN=RCOM_1048800 PE=4 SV=1
Gene Ontology
ID GO:0003840
description gamma-glutamyltranspeptidase 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58229: 179809-180377 , PASA_asmbl_58230: 180710-181592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_240 0.0 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
2 Hb_000022_180 0.1243550086 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
3 Hb_000175_120 0.1251542111 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
4 Hb_012565_080 0.1254792233 - - serine/threonine kinase, putative [Ricinus communis]
5 Hb_004109_380 0.1260848889 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
6 Hb_000571_160 0.1298386447 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
7 Hb_011828_030 0.1307439438 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
8 Hb_000679_210 0.136429084 - - grr1, plant, putative [Ricinus communis]
9 Hb_185830_070 0.1402226327 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
10 Hb_011861_080 0.1409344915 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
11 Hb_003398_070 0.1420738971 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
12 Hb_000049_150 0.1422170272 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
13 Hb_000940_150 0.1439699475 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
14 Hb_001662_180 0.1454739181 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
15 Hb_000081_120 0.1496838106 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
16 Hb_000105_030 0.1503237294 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
17 Hb_000163_270 0.1512659194 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
18 Hb_008948_160 0.1525356377 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
19 Hb_001699_280 0.1530379667 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
20 Hb_000631_110 0.153279045 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000789_240 Hb_000789_240 Hb_000022_180 Hb_000022_180 Hb_000789_240--Hb_000022_180 Hb_000175_120 Hb_000175_120 Hb_000789_240--Hb_000175_120 Hb_012565_080 Hb_012565_080 Hb_000789_240--Hb_012565_080 Hb_004109_380 Hb_004109_380 Hb_000789_240--Hb_004109_380 Hb_000571_160 Hb_000571_160 Hb_000789_240--Hb_000571_160 Hb_011828_030 Hb_011828_030 Hb_000789_240--Hb_011828_030 Hb_000645_240 Hb_000645_240 Hb_000022_180--Hb_000645_240 Hb_011861_080 Hb_011861_080 Hb_000022_180--Hb_011861_080 Hb_000866_370 Hb_000866_370 Hb_000022_180--Hb_000866_370 Hb_000866_090 Hb_000866_090 Hb_000022_180--Hb_000866_090 Hb_004108_170 Hb_004108_170 Hb_000022_180--Hb_004108_170 Hb_000940_150 Hb_000940_150 Hb_000175_120--Hb_000940_150 Hb_000631_110 Hb_000631_110 Hb_000175_120--Hb_000631_110 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_185830_070 Hb_185830_070 Hb_000175_120--Hb_185830_070 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_020178_060 Hb_020178_060 Hb_012565_080--Hb_020178_060 Hb_001416_020 Hb_001416_020 Hb_012565_080--Hb_001416_020 Hb_002827_020 Hb_002827_020 Hb_012565_080--Hb_002827_020 Hb_000283_150 Hb_000283_150 Hb_012565_080--Hb_000283_150 Hb_002016_040 Hb_002016_040 Hb_012565_080--Hb_002016_040 Hb_001031_090 Hb_001031_090 Hb_004109_380--Hb_001031_090 Hb_004223_160 Hb_004223_160 Hb_004109_380--Hb_004223_160 Hb_004109_380--Hb_000571_160 Hb_000105_040 Hb_000105_040 Hb_004109_380--Hb_000105_040 Hb_002005_030 Hb_002005_030 Hb_004109_380--Hb_002005_030 Hb_001699_280 Hb_001699_280 Hb_004109_380--Hb_001699_280 Hb_000049_150 Hb_000049_150 Hb_000571_160--Hb_000049_150 Hb_010809_010 Hb_010809_010 Hb_000571_160--Hb_010809_010 Hb_006907_140 Hb_006907_140 Hb_000571_160--Hb_006907_140 Hb_007576_210 Hb_007576_210 Hb_000571_160--Hb_007576_210 Hb_000571_160--Hb_011828_030 Hb_011828_030--Hb_001699_280 Hb_011828_030--Hb_000105_040 Hb_011947_050 Hb_011947_050 Hb_011828_030--Hb_011947_050 Hb_000069_410 Hb_000069_410 Hb_011828_030--Hb_000069_410 Hb_000836_020 Hb_000836_020 Hb_011828_030--Hb_000836_020 Hb_003581_170 Hb_003581_170 Hb_011828_030--Hb_003581_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.931189 7.00092 0.630439 2.52204 2.49116 2.44979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10531 0.810776 0.701755 6.46527 2.94173

CAGE analysis