Hb_002016_040

Information

Type rubber biosynthesis
Description Gene Name: SRPP8
Location Contig2016: 43950-45040
Sequence    

Annotation

kegg
ID rcu:RCOM_1439890
description Small rubber particle protein, putative
nr
ID XP_012082731.1
description PREDICTED: stress-related protein [Jatropha curcas]
swissprot
ID Q9SW70
description Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1
trembl
ID A0A067JZA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13909 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_040 0.0 rubber biosynthesis Gene Name: SRPP8 PREDICTED: stress-related protein [Jatropha curcas]
2 Hb_002374_220 0.1561829531 - - hypothetical protein CICLE_v10001597mg [Citrus clementina]
3 Hb_001638_090 0.1572998642 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
4 Hb_012565_080 0.1711913562 - - serine/threonine kinase, putative [Ricinus communis]
5 Hb_004109_380 0.1730096298 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
6 Hb_000283_150 0.1732505331 - - Ankyrin repeat family protein [Theobroma cacao]
7 Hb_020178_060 0.1749493072 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
8 Hb_001416_020 0.1750630695 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
9 Hb_001699_150 0.1770728986 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
10 Hb_000640_130 0.1808937365 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
11 Hb_001031_090 0.1821437825 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
12 Hb_003849_240 0.1827666782 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_016734_060 0.1828887851 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
14 Hb_004126_080 0.1831887597 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
15 Hb_000789_240 0.1835958172 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
16 Hb_000580_050 0.1855729753 - - -
17 Hb_001799_190 0.1870614008 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
18 Hb_008948_140 0.1871451644 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
19 Hb_014720_020 0.1878468829 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
20 Hb_002874_130 0.1884650158 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_040 Hb_002016_040 Hb_002374_220 Hb_002374_220 Hb_002016_040--Hb_002374_220 Hb_001638_090 Hb_001638_090 Hb_002016_040--Hb_001638_090 Hb_012565_080 Hb_012565_080 Hb_002016_040--Hb_012565_080 Hb_004109_380 Hb_004109_380 Hb_002016_040--Hb_004109_380 Hb_000283_150 Hb_000283_150 Hb_002016_040--Hb_000283_150 Hb_020178_060 Hb_020178_060 Hb_002016_040--Hb_020178_060 Hb_003913_110 Hb_003913_110 Hb_002374_220--Hb_003913_110 Hb_002311_290 Hb_002311_290 Hb_002374_220--Hb_002311_290 Hb_001655_060 Hb_001655_060 Hb_002374_220--Hb_001655_060 Hb_016734_060 Hb_016734_060 Hb_002374_220--Hb_016734_060 Hb_009486_180 Hb_009486_180 Hb_002374_220--Hb_009486_180 Hb_001452_220 Hb_001452_220 Hb_002374_220--Hb_001452_220 Hb_000648_080 Hb_000648_080 Hb_001638_090--Hb_000648_080 Hb_001104_110 Hb_001104_110 Hb_001638_090--Hb_001104_110 Hb_001638_090--Hb_016734_060 Hb_000768_180 Hb_000768_180 Hb_001638_090--Hb_000768_180 Hb_004916_020 Hb_004916_020 Hb_001638_090--Hb_004916_020 Hb_002890_120 Hb_002890_120 Hb_001638_090--Hb_002890_120 Hb_000789_240 Hb_000789_240 Hb_012565_080--Hb_000789_240 Hb_012565_080--Hb_020178_060 Hb_001416_020 Hb_001416_020 Hb_012565_080--Hb_001416_020 Hb_002827_020 Hb_002827_020 Hb_012565_080--Hb_002827_020 Hb_012565_080--Hb_000283_150 Hb_001031_090 Hb_001031_090 Hb_004109_380--Hb_001031_090 Hb_004223_160 Hb_004223_160 Hb_004109_380--Hb_004223_160 Hb_000571_160 Hb_000571_160 Hb_004109_380--Hb_000571_160 Hb_000105_040 Hb_000105_040 Hb_004109_380--Hb_000105_040 Hb_002005_030 Hb_002005_030 Hb_004109_380--Hb_002005_030 Hb_001699_280 Hb_001699_280 Hb_004109_380--Hb_001699_280 Hb_000283_150--Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_000283_150--Hb_000640_130 Hb_000283_150--Hb_002827_020 Hb_000521_170 Hb_000521_170 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_000283_150--Hb_020178_060 Hb_002903_130 Hb_002903_130 Hb_020178_060--Hb_002903_130 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_000538_190 Hb_000538_190 Hb_020178_060--Hb_000538_190 Hb_020178_060--Hb_000521_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194307 0.793915 0.242554 0.268906 0.58642 0.302385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.214558 0.224929 0 0.866256 0.33712

CAGE analysis