Hb_002374_220

Information

Type -
Description -
Location Contig2374: 180797-184671
Sequence    

Annotation

kegg
ID cit:102612743
description replication factor C subunit 3-like
nr
ID XP_006434236.1
description hypothetical protein CICLE_v10001597mg [Citrus clementina]
swissprot
ID Q9CAQ8
description Replication factor C subunit 5 OS=Arabidopsis thaliana GN=RFC5 PE=1 SV=1
trembl
ID V4TCU6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001597mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description replication factor c subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_220 0.0 - - hypothetical protein CICLE_v10001597mg [Citrus clementina]
2 Hb_003913_110 0.1121417207 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
3 Hb_002311_290 0.1161020512 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
4 Hb_001655_060 0.1180715922 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
5 Hb_016734_060 0.1186399472 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
6 Hb_009486_180 0.1210880611 - - unknown [Glycine max]
7 Hb_001452_220 0.1222845288 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
8 Hb_002890_120 0.1248119431 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
9 Hb_002631_170 0.125302757 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
10 Hb_000236_400 0.1270392055 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
11 Hb_001235_140 0.1281866705 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
12 Hb_171900_070 0.1304864348 - - -
13 Hb_003498_120 0.1314589015 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
14 Hb_003529_170 0.131580541 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
15 Hb_004586_350 0.1332533988 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
16 Hb_000742_170 0.133579017 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_006198_120 0.1345788553 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
18 Hb_001085_110 0.135809187 - - T6D22.2 [Arabidopsis thaliana]
19 Hb_001062_010 0.1359087632 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
20 Hb_005333_160 0.137444498 - - hypothetical protein B456_009G230200 [Gossypium raimondii]

Gene co-expression network

sample Hb_002374_220 Hb_002374_220 Hb_003913_110 Hb_003913_110 Hb_002374_220--Hb_003913_110 Hb_002311_290 Hb_002311_290 Hb_002374_220--Hb_002311_290 Hb_001655_060 Hb_001655_060 Hb_002374_220--Hb_001655_060 Hb_016734_060 Hb_016734_060 Hb_002374_220--Hb_016734_060 Hb_009486_180 Hb_009486_180 Hb_002374_220--Hb_009486_180 Hb_001452_220 Hb_001452_220 Hb_002374_220--Hb_001452_220 Hb_003913_110--Hb_001452_220 Hb_000608_230 Hb_000608_230 Hb_003913_110--Hb_000608_230 Hb_011173_030 Hb_011173_030 Hb_003913_110--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_003913_110--Hb_000307_210 Hb_000740_100 Hb_000740_100 Hb_003913_110--Hb_000740_100 Hb_028487_010 Hb_028487_010 Hb_003913_110--Hb_028487_010 Hb_007657_020 Hb_007657_020 Hb_002311_290--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_002311_290--Hb_002681_090 Hb_000603_030 Hb_000603_030 Hb_002311_290--Hb_000603_030 Hb_001062_010 Hb_001062_010 Hb_002311_290--Hb_001062_010 Hb_002631_170 Hb_002631_170 Hb_002311_290--Hb_002631_170 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_005271_190 Hb_005271_190 Hb_001655_060--Hb_005271_190 Hb_000788_070 Hb_000788_070 Hb_001655_060--Hb_000788_070 Hb_188126_010 Hb_188126_010 Hb_001655_060--Hb_188126_010 Hb_001655_060--Hb_000740_100 Hb_001655_060--Hb_001062_010 Hb_001789_040 Hb_001789_040 Hb_001655_060--Hb_001789_040 Hb_001031_090 Hb_001031_090 Hb_016734_060--Hb_001031_090 Hb_002046_010 Hb_002046_010 Hb_016734_060--Hb_002046_010 Hb_002217_430 Hb_002217_430 Hb_016734_060--Hb_002217_430 Hb_002016_090 Hb_002016_090 Hb_016734_060--Hb_002016_090 Hb_002805_210 Hb_002805_210 Hb_016734_060--Hb_002805_210 Hb_027472_220 Hb_027472_220 Hb_016734_060--Hb_027472_220 Hb_009175_020 Hb_009175_020 Hb_009486_180--Hb_009175_020 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_000011_230 Hb_000011_230 Hb_009486_180--Hb_000011_230 Hb_009486_180--Hb_002311_290 Hb_009486_180--Hb_001062_010 Hb_003739_030 Hb_003739_030 Hb_001452_220--Hb_003739_030 Hb_002391_370 Hb_002391_370 Hb_001452_220--Hb_002391_370 Hb_001452_220--Hb_028487_010 Hb_002909_090 Hb_002909_090 Hb_001452_220--Hb_002909_090 Hb_001452_220--Hb_011173_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63707 2.06802 1.0598 1.39298 2.35012 2.16898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08582 1.34552 0.241811 3.84731 1.79577

CAGE analysis