Hb_012565_080

Information

Type -
Description -
Location Contig12565: 66601-69670
Sequence    

Annotation

kegg
ID rcu:RCOM_1728300
description serine/threonine kinase, putative (EC:2.7.10.2)
nr
ID XP_002516759.1
description serine/threonine kinase, putative [Ricinus communis]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID B9RSP0
description Serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_1728300 PE=3 SV=1
Gene Ontology
ID GO:0000166
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07834: 66687-66785 , PASA_asmbl_07835: 66956-67185 , PASA_asmbl_07836: 67218-68234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012565_080 0.0 - - serine/threonine kinase, putative [Ricinus communis]
2 Hb_000789_240 0.1254792233 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
3 Hb_020178_060 0.1484564562 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
4 Hb_001416_020 0.1628611785 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
5 Hb_002827_020 0.1659217584 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
6 Hb_000283_150 0.1702129762 - - Ankyrin repeat family protein [Theobroma cacao]
7 Hb_002016_040 0.1711913562 rubber biosynthesis Gene Name: SRPP8 PREDICTED: stress-related protein [Jatropha curcas]
8 Hb_001946_150 0.1764606479 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_970 0.1802614095 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
10 Hb_000645_240 0.1812482777 - - AMP dependent ligase, putative [Ricinus communis]
11 Hb_002043_010 0.1813631727 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_008948_160 0.1817357339 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
13 Hb_001514_130 0.1818410445 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
14 Hb_000081_120 0.1825081854 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
15 Hb_027337_090 0.1849192666 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
16 Hb_000022_180 0.1862971807 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_000640_130 0.1863027061 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
18 Hb_011828_030 0.1867580229 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
19 Hb_000036_050 0.1888523797 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
20 Hb_000200_280 0.1915983772 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]

Gene co-expression network

sample Hb_012565_080 Hb_012565_080 Hb_000789_240 Hb_000789_240 Hb_012565_080--Hb_000789_240 Hb_020178_060 Hb_020178_060 Hb_012565_080--Hb_020178_060 Hb_001416_020 Hb_001416_020 Hb_012565_080--Hb_001416_020 Hb_002827_020 Hb_002827_020 Hb_012565_080--Hb_002827_020 Hb_000283_150 Hb_000283_150 Hb_012565_080--Hb_000283_150 Hb_002016_040 Hb_002016_040 Hb_012565_080--Hb_002016_040 Hb_000022_180 Hb_000022_180 Hb_000789_240--Hb_000022_180 Hb_000175_120 Hb_000175_120 Hb_000789_240--Hb_000175_120 Hb_004109_380 Hb_004109_380 Hb_000789_240--Hb_004109_380 Hb_000571_160 Hb_000571_160 Hb_000789_240--Hb_000571_160 Hb_011828_030 Hb_011828_030 Hb_000789_240--Hb_011828_030 Hb_002903_130 Hb_002903_130 Hb_020178_060--Hb_002903_130 Hb_020178_060--Hb_000283_150 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_000538_190 Hb_000538_190 Hb_020178_060--Hb_000538_190 Hb_000521_170 Hb_000521_170 Hb_020178_060--Hb_000521_170 Hb_000640_130 Hb_000640_130 Hb_001416_020--Hb_000640_130 Hb_001416_020--Hb_000521_170 Hb_001416_020--Hb_000283_150 Hb_001575_010 Hb_001575_010 Hb_001416_020--Hb_001575_010 Hb_005143_030 Hb_005143_030 Hb_001416_020--Hb_005143_030 Hb_011716_090 Hb_011716_090 Hb_001416_020--Hb_011716_090 Hb_000200_280 Hb_000200_280 Hb_002827_020--Hb_000200_280 Hb_002827_020--Hb_011716_090 Hb_002827_020--Hb_000640_130 Hb_006586_030 Hb_006586_030 Hb_002827_020--Hb_006586_030 Hb_002827_020--Hb_001416_020 Hb_002827_020--Hb_000283_150 Hb_000283_150--Hb_000640_130 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_002374_220 Hb_002374_220 Hb_002016_040--Hb_002374_220 Hb_001638_090 Hb_001638_090 Hb_002016_040--Hb_001638_090 Hb_002016_040--Hb_004109_380 Hb_002016_040--Hb_000283_150 Hb_002016_040--Hb_020178_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4366 12.2126 0.790161 2.34424 6.44368 2.90979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07945 2.73178 1.11035 12.7806 3.71415

CAGE analysis