Hb_176685_010

Information

Type -
Description -
Location Contig176685: 2187-2462
Sequence    

Annotation

kegg
ID sbi:SORBI_02g023250
description SORBIDRAFT_02g023250, Sb02g023250; hypothetical protein
nr
ID BAD28748.1
description receptor-type protein kinase LRK1-like [Oryza sativa Japonica Group]
swissprot
ID Q7FK82
description Probable L-type lectin-domain containing receptor kinase I.2 OS=Arabidopsis thaliana GN=LECRK12 PE=2 SV=2
trembl
ID Q6ERH2
description Receptor-type protein kinase LRK1-like OS=Oryza sativa subsp. japonica GN=OJ1253_E02.35 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176685_010 0.0 - - receptor-type protein kinase LRK1-like [Oryza sativa Japonica Group]
2 Hb_111985_010 0.2694399085 - - -
3 Hb_011206_020 0.2812467494 - - -
4 Hb_007083_020 0.2904149908 - - hypothetical protein F775_15403 [Aegilops tauschii]
5 Hb_003266_040 0.2920924499 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
6 Hb_004361_010 0.2979791999 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
7 Hb_001950_040 0.3036586098 - - -
8 Hb_000679_200 0.3045854181 - - EIN3-binding F box protein 1 [Theobroma cacao]
9 Hb_033385_010 0.3120664576 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
10 Hb_002078_190 0.3146898583 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005542_090 0.3242754249 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
12 Hb_183522_010 0.325130899 - - Far upstream element-binding protein, putative [Ricinus communis]
13 Hb_006629_010 0.3260425999 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
14 Hb_001427_060 0.3286410455 - - -
15 Hb_000976_030 0.3320363717 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
16 Hb_000066_180 0.3337080974 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
17 Hb_179812_010 0.3370677023 - - TdcA1-ORF1-ORF2 [Daucus carota]
18 Hb_000617_170 0.3374870254 - - -
19 Hb_106415_010 0.3375703552 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
20 Hb_001712_080 0.3381389865 - - -

Gene co-expression network

sample Hb_176685_010 Hb_176685_010 Hb_111985_010 Hb_111985_010 Hb_176685_010--Hb_111985_010 Hb_011206_020 Hb_011206_020 Hb_176685_010--Hb_011206_020 Hb_007083_020 Hb_007083_020 Hb_176685_010--Hb_007083_020 Hb_003266_040 Hb_003266_040 Hb_176685_010--Hb_003266_040 Hb_004361_010 Hb_004361_010 Hb_176685_010--Hb_004361_010 Hb_001950_040 Hb_001950_040 Hb_176685_010--Hb_001950_040 Hb_111985_010--Hb_004361_010 Hb_000836_100 Hb_000836_100 Hb_111985_010--Hb_000836_100 Hb_174547_010 Hb_174547_010 Hb_111985_010--Hb_174547_010 Hb_111985_010--Hb_003266_040 Hb_000869_060 Hb_000869_060 Hb_111985_010--Hb_000869_060 Hb_000098_300 Hb_000098_300 Hb_011206_020--Hb_000098_300 Hb_068014_010 Hb_068014_010 Hb_011206_020--Hb_068014_010 Hb_052402_010 Hb_052402_010 Hb_011206_020--Hb_052402_010 Hb_011206_020--Hb_007083_020 Hb_000740_120 Hb_000740_120 Hb_011206_020--Hb_000740_120 Hb_131652_010 Hb_131652_010 Hb_011206_020--Hb_131652_010 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_007083_020--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_179812_010 Hb_179812_010 Hb_003266_040--Hb_179812_010 Hb_003266_040--Hb_007083_020 Hb_003266_040--Hb_005542_090 Hb_141132_010 Hb_141132_010 Hb_003266_040--Hb_141132_010 Hb_121467_010 Hb_121467_010 Hb_003266_040--Hb_121467_010 Hb_003266_040--Hb_106415_010 Hb_002546_040 Hb_002546_040 Hb_004361_010--Hb_002546_040 Hb_000733_270 Hb_000733_270 Hb_004361_010--Hb_000733_270 Hb_009848_020 Hb_009848_020 Hb_004361_010--Hb_009848_020 Hb_084470_010 Hb_084470_010 Hb_004361_010--Hb_084470_010 Hb_000679_200 Hb_000679_200 Hb_004361_010--Hb_000679_200 Hb_116638_010 Hb_116638_010 Hb_001950_040--Hb_116638_010 Hb_001950_040--Hb_007083_020 Hb_000086_100 Hb_000086_100 Hb_001950_040--Hb_000086_100 Hb_002974_050 Hb_002974_050 Hb_001950_040--Hb_002974_050 Hb_001950_040--Hb_003371_170 Hb_169329_010 Hb_169329_010 Hb_001950_040--Hb_169329_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.432734 0 1.39962 0.395454 1.60444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.466786 0 0 0.516055 0

CAGE analysis