Hb_052402_010

Information

Type -
Description -
Location Contig52402: 32-594
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46920: 362-726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052402_010 0.0 - - -
2 Hb_169170_010 0.2008367194 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
3 Hb_005318_020 0.2049953516 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
4 Hb_000248_030 0.2078904401 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
5 Hb_011206_020 0.2201662431 - - -
6 Hb_177103_010 0.2246341277 - - PREDICTED: histone H2AX [Elaeis guineensis]
7 Hb_000248_010 0.2258008455 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
8 Hb_079978_010 0.2316916693 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
9 Hb_002960_050 0.2320853587 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
10 Hb_007188_030 0.2344017572 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
11 Hb_007083_050 0.236871897 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
12 Hb_000976_030 0.2373493803 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
13 Hb_116632_010 0.2432723888 - - unnamed protein product [Vitis vinifera]
14 Hb_079212_010 0.2445438717 - - conserved hypothetical protein [Ricinus communis]
15 Hb_068014_010 0.2457293578 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
16 Hb_000740_120 0.2484735098 - - -
17 Hb_002815_070 0.2490233646 - - hypothetical protein PHAVU_005G048300g [Phaseolus vulgaris]
18 Hb_003623_020 0.252598325 - - -
19 Hb_006198_090 0.254757184 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
20 Hb_122567_020 0.2564951132 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]

Gene co-expression network

sample Hb_052402_010 Hb_052402_010 Hb_169170_010 Hb_169170_010 Hb_052402_010--Hb_169170_010 Hb_005318_020 Hb_005318_020 Hb_052402_010--Hb_005318_020 Hb_000248_030 Hb_000248_030 Hb_052402_010--Hb_000248_030 Hb_011206_020 Hb_011206_020 Hb_052402_010--Hb_011206_020 Hb_177103_010 Hb_177103_010 Hb_052402_010--Hb_177103_010 Hb_000248_010 Hb_000248_010 Hb_052402_010--Hb_000248_010 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030 Hb_079978_010 Hb_079978_010 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_005318_020--Hb_007447_020 Hb_000683_090 Hb_000683_090 Hb_005318_020--Hb_000683_090 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130 Hb_000248_030--Hb_000248_010 Hb_005933_010 Hb_005933_010 Hb_000248_030--Hb_005933_010 Hb_001235_060 Hb_001235_060 Hb_000248_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_000248_030--Hb_122567_020 Hb_073559_010 Hb_073559_010 Hb_000248_030--Hb_073559_010 Hb_002960_050 Hb_002960_050 Hb_000248_030--Hb_002960_050 Hb_000098_300 Hb_000098_300 Hb_011206_020--Hb_000098_300 Hb_011206_020--Hb_068014_010 Hb_007083_020 Hb_007083_020 Hb_011206_020--Hb_007083_020 Hb_000740_120 Hb_000740_120 Hb_011206_020--Hb_000740_120 Hb_131652_010 Hb_131652_010 Hb_011206_020--Hb_131652_010 Hb_177103_010--Hb_007188_030 Hb_177103_010--Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_177103_010--Hb_003656_150 Hb_005679_070 Hb_005679_070 Hb_177103_010--Hb_005679_070 Hb_177103_010--Hb_068014_010 Hb_000248_010--Hb_002960_050 Hb_000248_010--Hb_073559_010 Hb_000248_010--Hb_001235_060 Hb_088065_010 Hb_088065_010 Hb_000248_010--Hb_088065_010 Hb_000248_010--Hb_005933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.38283 0 0.437352 13.2178 2.73812 66.3678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96208 3.15886 3.81982 20.2133 1.62178

CAGE analysis