Hb_001950_040

Information

Type -
Description -
Location Contig1950: 17847-18083
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19460: 16699-18654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_040 0.0 - - -
2 Hb_116638_010 0.2216627221 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007083_020 0.2276804504 - - hypothetical protein F775_15403 [Aegilops tauschii]
4 Hb_000086_100 0.2302484567 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
5 Hb_002974_050 0.2321136244 - - -
6 Hb_003371_170 0.2330572648 - - conserved hypothetical protein [Ricinus communis]
7 Hb_169329_010 0.2333427567 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
8 Hb_054586_020 0.2351783502 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
9 Hb_128998_010 0.2364211733 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
10 Hb_106415_010 0.2376890589 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
11 Hb_025905_020 0.2419305565 - - major allergen Pru ar 1-like [Jatropha curcas]
12 Hb_001708_010 0.242423536 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
13 Hb_001691_150 0.2425858718 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
14 Hb_059641_010 0.2431706037 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_002078_190 0.2440422768 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002084_010 0.2441610337 - - hypothetical protein VITISV_017990 [Vitis vinifera]
17 Hb_001386_140 0.2484134761 - - PREDICTED: B2 protein [Jatropha curcas]
18 Hb_114079_010 0.2499136611 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
19 Hb_146675_010 0.2499853237 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
20 Hb_097347_010 0.2500839068 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]

Gene co-expression network

sample Hb_001950_040 Hb_001950_040 Hb_116638_010 Hb_116638_010 Hb_001950_040--Hb_116638_010 Hb_007083_020 Hb_007083_020 Hb_001950_040--Hb_007083_020 Hb_000086_100 Hb_000086_100 Hb_001950_040--Hb_000086_100 Hb_002974_050 Hb_002974_050 Hb_001950_040--Hb_002974_050 Hb_003371_170 Hb_003371_170 Hb_001950_040--Hb_003371_170 Hb_169329_010 Hb_169329_010 Hb_001950_040--Hb_169329_010 Hb_015354_010 Hb_015354_010 Hb_116638_010--Hb_015354_010 Hb_003376_070 Hb_003376_070 Hb_116638_010--Hb_003376_070 Hb_001052_040 Hb_001052_040 Hb_116638_010--Hb_001052_040 Hb_159307_010 Hb_159307_010 Hb_116638_010--Hb_159307_010 Hb_118720_010 Hb_118720_010 Hb_116638_010--Hb_118720_010 Hb_002742_080 Hb_002742_080 Hb_116638_010--Hb_002742_080 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_068014_010 Hb_068014_010 Hb_007083_020--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_007083_020--Hb_106415_010 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_001351_080 Hb_001351_080 Hb_000086_100--Hb_001351_080 Hb_010831_020 Hb_010831_020 Hb_000086_100--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_000086_100--Hb_000886_060 Hb_001691_150 Hb_001691_150 Hb_000086_100--Hb_001691_150 Hb_003038_220 Hb_003038_220 Hb_000086_100--Hb_003038_220 Hb_001493_010 Hb_001493_010 Hb_000086_100--Hb_001493_010 Hb_000991_070 Hb_000991_070 Hb_002974_050--Hb_000991_070 Hb_001386_140 Hb_001386_140 Hb_002974_050--Hb_001386_140 Hb_000825_030 Hb_000825_030 Hb_002974_050--Hb_000825_030 Hb_006663_090 Hb_006663_090 Hb_002974_050--Hb_006663_090 Hb_005023_030 Hb_005023_030 Hb_002974_050--Hb_005023_030 Hb_006629_010 Hb_006629_010 Hb_002974_050--Hb_006629_010 Hb_000015_070 Hb_000015_070 Hb_003371_170--Hb_000015_070 Hb_003371_170--Hb_006663_090 Hb_003371_170--Hb_106415_010 Hb_108227_010 Hb_108227_010 Hb_003371_170--Hb_108227_010 Hb_076875_020 Hb_076875_020 Hb_003371_170--Hb_076875_020 Hb_003371_170--Hb_068014_010 Hb_000258_360 Hb_000258_360 Hb_169329_010--Hb_000258_360 Hb_059641_010 Hb_059641_010 Hb_169329_010--Hb_059641_010 Hb_177152_010 Hb_177152_010 Hb_169329_010--Hb_177152_010 Hb_004935_080 Hb_004935_080 Hb_169329_010--Hb_004935_080 Hb_013358_100 Hb_013358_100 Hb_169329_010--Hb_013358_100 Hb_000136_190 Hb_000136_190 Hb_169329_010--Hb_000136_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0057 71.2637 4.02442 85.1307 22.3211 138.881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1651 11.8936 9.46691 10.3498 2.32429

CAGE analysis