Hb_083569_010

Information

Type -
Description -
Location Contig83569: 1213-1785
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083569_010 0.0 - - -
2 Hb_094101_010 0.160659514 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
3 Hb_021583_010 0.2134417606 - - -
4 Hb_000563_220 0.222215683 - - hypothetical protein VITISV_004111 [Vitis vinifera]
5 Hb_009780_090 0.2229930951 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
6 Hb_003609_010 0.2491117187 - - -
7 Hb_003311_050 0.2793431731 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
8 Hb_024828_040 0.281524069 - - -
9 Hb_000808_060 0.2868300737 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
10 Hb_004206_040 0.2904525708 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000928_150 0.2959059239 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005625_040 0.2967623925 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
13 Hb_080530_020 0.3082125273 - - -
14 Hb_166786_030 0.3108204854 - - PREDICTED: uncharacterized protein LOC105775425 [Gossypium raimondii]
15 Hb_000009_590 0.3113779547 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
16 Hb_103624_010 0.3124205027 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
17 Hb_035662_010 0.3137615283 - - conserved hypothetical protein [Ricinus communis]
18 Hb_026437_010 0.3149903883 - - -
19 Hb_002904_090 0.3154598954 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
20 Hb_003581_110 0.3171121314 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_083569_010 Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_083569_010--Hb_094101_010 Hb_021583_010 Hb_021583_010 Hb_083569_010--Hb_021583_010 Hb_000563_220 Hb_000563_220 Hb_083569_010--Hb_000563_220 Hb_009780_090 Hb_009780_090 Hb_083569_010--Hb_009780_090 Hb_003609_010 Hb_003609_010 Hb_083569_010--Hb_003609_010 Hb_003311_050 Hb_003311_050 Hb_083569_010--Hb_003311_050 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_094101_010--Hb_003311_050 Hb_094101_010--Hb_009780_090 Hb_094101_010--Hb_021583_010 Hb_000928_150 Hb_000928_150 Hb_094101_010--Hb_000928_150 Hb_021583_010--Hb_009780_090 Hb_021583_010--Hb_003311_050 Hb_019282_010 Hb_019282_010 Hb_021583_010--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_021583_010--Hb_001427_180 Hb_000563_220--Hb_003609_010 Hb_000563_220--Hb_094101_010 Hb_024828_040 Hb_024828_040 Hb_000563_220--Hb_024828_040 Hb_002904_090 Hb_002904_090 Hb_000563_220--Hb_002904_090 Hb_179763_020 Hb_179763_020 Hb_000563_220--Hb_179763_020 Hb_009780_090--Hb_003311_050 Hb_009780_090--Hb_000928_150 Hb_010874_030 Hb_010874_030 Hb_009780_090--Hb_010874_030 Hb_003609_010--Hb_094101_010 Hb_003609_010--Hb_002904_090 Hb_000317_090 Hb_000317_090 Hb_003609_010--Hb_000317_090 Hb_007904_190 Hb_007904_190 Hb_003609_010--Hb_007904_190 Hb_003311_050--Hb_000928_150 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126752 0.0660892 0 0 0.123621 0.171261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.116937 0 0.0489213 0

CAGE analysis