Hb_000928_150

Information

Type -
Description -
Location Contig928: 142757-143356
Sequence    

Annotation

kegg
ID rcu:RCOM_1516870
description hypothetical protein
nr
ID XP_002524009.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDE0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1516870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003311_050 0.1517329161 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
3 Hb_035662_010 0.1852505734 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009780_090 0.210017665 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
5 Hb_128376_010 0.2116807705 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_012423_010 0.2166380506 - - -
7 Hb_006269_040 0.228939764 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
8 Hb_179679_010 0.2311207028 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
9 Hb_002232_150 0.2393176553 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
10 Hb_006816_340 0.2416677635 - - -
11 Hb_094101_010 0.244978284 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
12 Hb_003388_100 0.2482631959 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
13 Hb_027420_050 0.2504544075 - - -
14 Hb_000886_060 0.2505743807 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
15 Hb_084429_010 0.2525793394 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
16 Hb_001493_010 0.2539017738 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
17 Hb_003025_050 0.2551022668 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
18 Hb_010874_030 0.2554116927 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
19 Hb_000152_670 0.2563295753 - - hypothetical protein VITISV_037603 [Vitis vinifera]
20 Hb_003995_010 0.2565452913 - - -

Gene co-expression network

sample Hb_000928_150 Hb_000928_150 Hb_003311_050 Hb_003311_050 Hb_000928_150--Hb_003311_050 Hb_035662_010 Hb_035662_010 Hb_000928_150--Hb_035662_010 Hb_009780_090 Hb_009780_090 Hb_000928_150--Hb_009780_090 Hb_128376_010 Hb_128376_010 Hb_000928_150--Hb_128376_010 Hb_012423_010 Hb_012423_010 Hb_000928_150--Hb_012423_010 Hb_006269_040 Hb_006269_040 Hb_000928_150--Hb_006269_040 Hb_003311_050--Hb_009780_090 Hb_094101_010 Hb_094101_010 Hb_003311_050--Hb_094101_010 Hb_010874_030 Hb_010874_030 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_003311_050--Hb_012423_010 Hb_001677_050 Hb_001677_050 Hb_035662_010--Hb_001677_050 Hb_000056_230 Hb_000056_230 Hb_035662_010--Hb_000056_230 Hb_114984_010 Hb_114984_010 Hb_035662_010--Hb_114984_010 Hb_001632_010 Hb_001632_010 Hb_035662_010--Hb_001632_010 Hb_010531_050 Hb_010531_050 Hb_035662_010--Hb_010531_050 Hb_083569_010 Hb_083569_010 Hb_009780_090--Hb_083569_010 Hb_009780_090--Hb_094101_010 Hb_009780_090--Hb_010874_030 Hb_021583_010 Hb_021583_010 Hb_009780_090--Hb_021583_010 Hb_000152_670 Hb_000152_670 Hb_128376_010--Hb_000152_670 Hb_004017_040 Hb_004017_040 Hb_128376_010--Hb_004017_040 Hb_001052_040 Hb_001052_040 Hb_128376_010--Hb_001052_040 Hb_000261_290 Hb_000261_290 Hb_128376_010--Hb_000261_290 Hb_002742_080 Hb_002742_080 Hb_128376_010--Hb_002742_080 Hb_010883_080 Hb_010883_080 Hb_128376_010--Hb_010883_080 Hb_009848_040 Hb_009848_040 Hb_012423_010--Hb_009848_040 Hb_012423_010--Hb_000152_670 Hb_003025_050 Hb_003025_050 Hb_012423_010--Hb_003025_050 Hb_167234_010 Hb_167234_010 Hb_012423_010--Hb_167234_010 Hb_002027_380 Hb_002027_380 Hb_012423_010--Hb_002027_380 Hb_000449_050 Hb_000449_050 Hb_012423_010--Hb_000449_050 Hb_144550_020 Hb_144550_020 Hb_006269_040--Hb_144550_020 Hb_179679_010 Hb_179679_010 Hb_006269_040--Hb_179679_010 Hb_012395_080 Hb_012395_080 Hb_006269_040--Hb_012395_080 Hb_002370_040 Hb_002370_040 Hb_006269_040--Hb_002370_040 Hb_000136_190 Hb_000136_190 Hb_006269_040--Hb_000136_190 Hb_001916_060 Hb_001916_060 Hb_006269_040--Hb_001916_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165528 0.170393 0.0352199 0.089767 0.166326 0.206849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.079358 0 0.0976332 0

CAGE analysis