Hb_001414_130

Information

Type -
Description -
Location Contig1414: 137338-139135
Sequence    

Annotation

kegg
ID sly:104645365
description uncharacterized LOC104645365
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_130 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_094101_010 0.1923579662 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
3 Hb_003311_050 0.2447703731 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
4 Hb_005269_030 0.2538794481 - - cysteine protease, putative [Ricinus communis]
5 Hb_000832_330 0.2650879183 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
6 Hb_004088_060 0.2660357312 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
7 Hb_018118_040 0.2821487327 - - -
8 Hb_000482_060 0.2892154122 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
9 Hb_000123_250 0.2915555694 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
10 Hb_001414_140 0.2925834507 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
11 Hb_015909_010 0.2947512148 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_002609_090 0.2971630183 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000928_150 0.2988980091 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004453_010 0.3074199989 - - conserved hypothetical protein [Ricinus communis]
15 Hb_040153_010 0.310037628 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
16 Hb_010874_030 0.3112834556 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
17 Hb_000904_080 0.3120676028 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
18 Hb_012423_010 0.3129306774 - - -
19 Hb_010565_020 0.3182617931 - - -
20 Hb_003633_140 0.318660582 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001414_130 Hb_001414_130 Hb_094101_010 Hb_094101_010 Hb_001414_130--Hb_094101_010 Hb_003311_050 Hb_003311_050 Hb_001414_130--Hb_003311_050 Hb_005269_030 Hb_005269_030 Hb_001414_130--Hb_005269_030 Hb_000832_330 Hb_000832_330 Hb_001414_130--Hb_000832_330 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_018118_040 Hb_018118_040 Hb_001414_130--Hb_018118_040 Hb_083569_010 Hb_083569_010 Hb_094101_010--Hb_083569_010 Hb_094101_010--Hb_003311_050 Hb_009780_090 Hb_009780_090 Hb_094101_010--Hb_009780_090 Hb_021583_010 Hb_021583_010 Hb_094101_010--Hb_021583_010 Hb_000928_150 Hb_000928_150 Hb_094101_010--Hb_000928_150 Hb_003311_050--Hb_000928_150 Hb_003311_050--Hb_009780_090 Hb_010874_030 Hb_010874_030 Hb_003311_050--Hb_010874_030 Hb_003656_120 Hb_003656_120 Hb_003311_050--Hb_003656_120 Hb_012423_010 Hb_012423_010 Hb_003311_050--Hb_012423_010 Hb_015909_010 Hb_015909_010 Hb_005269_030--Hb_015909_010 Hb_011030_030 Hb_011030_030 Hb_005269_030--Hb_011030_030 Hb_002003_110 Hb_002003_110 Hb_005269_030--Hb_002003_110 Hb_005269_030--Hb_003311_050 Hb_005269_030--Hb_094101_010 Hb_003405_040 Hb_003405_040 Hb_000832_330--Hb_003405_040 Hb_001935_210 Hb_001935_210 Hb_000832_330--Hb_001935_210 Hb_000832_330--Hb_018118_040 Hb_000025_550 Hb_000025_550 Hb_000832_330--Hb_000025_550 Hb_118346_010 Hb_118346_010 Hb_000832_330--Hb_118346_010 Hb_001638_080 Hb_001638_080 Hb_004088_060--Hb_001638_080 Hb_004088_060--Hb_010874_030 Hb_005048_060 Hb_005048_060 Hb_004088_060--Hb_005048_060 Hb_001214_150 Hb_001214_150 Hb_004088_060--Hb_001214_150 Hb_004088_060--Hb_015909_010 Hb_087086_020 Hb_087086_020 Hb_018118_040--Hb_087086_020 Hb_000152_510 Hb_000152_510 Hb_018118_040--Hb_000152_510 Hb_000538_010 Hb_000538_010 Hb_018118_040--Hb_000538_010 Hb_000225_050 Hb_000225_050 Hb_018118_040--Hb_000225_050 Hb_004204_050 Hb_004204_050 Hb_018118_040--Hb_004204_050 Hb_025214_090 Hb_025214_090 Hb_018118_040--Hb_025214_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0270413 0.0817462 0.0203277 0 0.0507175 0.0317808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.048855 0 0.0394675 0

CAGE analysis