Hb_011030_030

Information

Type -
Description -
Location Contig11030: 26828-28286
Sequence    

Annotation

kegg
ID tcc:TCM_006664
description PLC-like phosphodiesterases superfamily protein
nr
ID XP_007041898.1
description PLC-like phosphodiesterases superfamily protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DYA8
description PLC-like phosphodiesterases superfamily protein OS=Theobroma cacao GN=TCM_006664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011030_030 0.0 - - PLC-like phosphodiesterases superfamily protein [Theobroma cacao]
2 Hb_000208_030 0.2527424014 - - -
3 Hb_003416_050 0.2693539527 - - -
4 Hb_089437_010 0.2739988071 - - PREDICTED: polyadenylate-binding protein-interacting protein 10-like isoform X3 [Jatropha curcas]
5 Hb_005269_030 0.2903107977 - - cysteine protease, putative [Ricinus communis]
6 Hb_027428_030 0.295854587 - - unnamed protein product [Coffea canephora]
7 Hb_000482_060 0.304286763 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
8 Hb_107281_010 0.3071475019 - - protein with unknown function [Ricinus communis]
9 Hb_002417_060 0.3095231842 - - Cell division cycle protein, putative [Ricinus communis]
10 Hb_001414_140 0.3162300577 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
11 Hb_000567_040 0.324165859 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
12 Hb_010795_060 0.3352038881 - - -
13 Hb_000237_130 0.3407743103 - - -
14 Hb_000627_100 0.3439421293 - - -
15 Hb_004712_170 0.3443790015 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
16 Hb_001660_090 0.3456383959 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
17 Hb_001059_080 0.3509219457 - - PREDICTED: F-box protein At1g61340-like [Musa acuminata subsp. malaccensis]
18 Hb_000803_040 0.3512019597 - - -
19 Hb_068804_040 0.3516699498 - - -
20 Hb_001638_160 0.3517123402 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]

Gene co-expression network

sample Hb_011030_030 Hb_011030_030 Hb_000208_030 Hb_000208_030 Hb_011030_030--Hb_000208_030 Hb_003416_050 Hb_003416_050 Hb_011030_030--Hb_003416_050 Hb_089437_010 Hb_089437_010 Hb_011030_030--Hb_089437_010 Hb_005269_030 Hb_005269_030 Hb_011030_030--Hb_005269_030 Hb_027428_030 Hb_027428_030 Hb_011030_030--Hb_027428_030 Hb_000482_060 Hb_000482_060 Hb_011030_030--Hb_000482_060 Hb_000208_030--Hb_089437_010 Hb_001277_210 Hb_001277_210 Hb_000208_030--Hb_001277_210 Hb_012033_020 Hb_012033_020 Hb_000208_030--Hb_012033_020 Hb_000803_040 Hb_000803_040 Hb_000208_030--Hb_000803_040 Hb_004525_060 Hb_004525_060 Hb_000208_030--Hb_004525_060 Hb_001001_100 Hb_001001_100 Hb_003416_050--Hb_001001_100 Hb_068804_040 Hb_068804_040 Hb_003416_050--Hb_068804_040 Hb_000032_060 Hb_000032_060 Hb_003416_050--Hb_000032_060 Hb_002272_040 Hb_002272_040 Hb_003416_050--Hb_002272_040 Hb_177132_010 Hb_177132_010 Hb_003416_050--Hb_177132_010 Hb_089437_010--Hb_001277_210 Hb_089437_010--Hb_003416_050 Hb_036790_090 Hb_036790_090 Hb_089437_010--Hb_036790_090 Hb_000275_180 Hb_000275_180 Hb_089437_010--Hb_000275_180 Hb_001414_130 Hb_001414_130 Hb_005269_030--Hb_001414_130 Hb_015909_010 Hb_015909_010 Hb_005269_030--Hb_015909_010 Hb_002003_110 Hb_002003_110 Hb_005269_030--Hb_002003_110 Hb_003311_050 Hb_003311_050 Hb_005269_030--Hb_003311_050 Hb_094101_010 Hb_094101_010 Hb_005269_030--Hb_094101_010 Hb_000173_480 Hb_000173_480 Hb_027428_030--Hb_000173_480 Hb_000567_040 Hb_000567_040 Hb_027428_030--Hb_000567_040 Hb_002417_060 Hb_002417_060 Hb_027428_030--Hb_002417_060 Hb_020730_010 Hb_020730_010 Hb_027428_030--Hb_020730_010 Hb_002626_040 Hb_002626_040 Hb_027428_030--Hb_002626_040 Hb_010795_060 Hb_010795_060 Hb_027428_030--Hb_010795_060 Hb_000160_240 Hb_000160_240 Hb_000482_060--Hb_000160_240 Hb_003849_260 Hb_003849_260 Hb_000482_060--Hb_003849_260 Hb_003100_010 Hb_003100_010 Hb_000482_060--Hb_003100_010 Hb_000482_060--Hb_027428_030 Hb_000836_120 Hb_000836_120 Hb_000482_060--Hb_000836_120 Hb_002235_240 Hb_002235_240 Hb_000482_060--Hb_002235_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.345353 0.142168 0 0.33605 0.165126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137834 0.216561 0 0.0450834 0

CAGE analysis