Hb_012033_020

Information

Type -
Description -
Location Contig12033: 27908-29509
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012033_020 0.0 - - -
2 Hb_188209_010 0.1722247111 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
3 Hb_005511_100 0.1741112028 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
4 Hb_000710_010 0.1916407027 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
5 Hb_021576_040 0.1988332358 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003446_050 0.1999134531 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
7 Hb_000510_330 0.2113470668 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
8 Hb_000218_010 0.2127538014 - - -
9 Hb_009486_150 0.2172437453 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
10 Hb_001301_240 0.218825031 - - -
11 Hb_000326_070 0.2238638255 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
12 Hb_012114_060 0.2241686399 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
13 Hb_013405_060 0.2277017944 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
14 Hb_017002_020 0.2277795372 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
15 Hb_001504_020 0.2287478518 - - 40S ribosomal protein S12A [Hevea brasiliensis]
16 Hb_000152_230 0.2293017275 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
17 Hb_000904_080 0.2297883577 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
18 Hb_031403_020 0.2298658273 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
19 Hb_002820_110 0.230058638 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
20 Hb_000789_070 0.2300593713 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012033_020 Hb_012033_020 Hb_188209_010 Hb_188209_010 Hb_012033_020--Hb_188209_010 Hb_005511_100 Hb_005511_100 Hb_012033_020--Hb_005511_100 Hb_000710_010 Hb_000710_010 Hb_012033_020--Hb_000710_010 Hb_021576_040 Hb_021576_040 Hb_012033_020--Hb_021576_040 Hb_003446_050 Hb_003446_050 Hb_012033_020--Hb_003446_050 Hb_000510_330 Hb_000510_330 Hb_012033_020--Hb_000510_330 Hb_000788_130 Hb_000788_130 Hb_188209_010--Hb_000788_130 Hb_000789_070 Hb_000789_070 Hb_188209_010--Hb_000789_070 Hb_000326_070 Hb_000326_070 Hb_188209_010--Hb_000326_070 Hb_003371_180 Hb_003371_180 Hb_188209_010--Hb_003371_180 Hb_000175_090 Hb_000175_090 Hb_188209_010--Hb_000175_090 Hb_013405_060 Hb_013405_060 Hb_188209_010--Hb_013405_060 Hb_007441_210 Hb_007441_210 Hb_005511_100--Hb_007441_210 Hb_009486_150 Hb_009486_150 Hb_005511_100--Hb_009486_150 Hb_007229_070 Hb_007229_070 Hb_005511_100--Hb_007229_070 Hb_000565_030 Hb_000565_030 Hb_005511_100--Hb_000565_030 Hb_007558_010 Hb_007558_010 Hb_005511_100--Hb_007558_010 Hb_017469_020 Hb_017469_020 Hb_005511_100--Hb_017469_020 Hb_000710_010--Hb_021576_040 Hb_002234_140 Hb_002234_140 Hb_000710_010--Hb_002234_140 Hb_001427_050 Hb_001427_050 Hb_000710_010--Hb_001427_050 Hb_008112_040 Hb_008112_040 Hb_000710_010--Hb_008112_040 Hb_003687_230 Hb_003687_230 Hb_000710_010--Hb_003687_230 Hb_000438_170 Hb_000438_170 Hb_000710_010--Hb_000438_170 Hb_021576_040--Hb_002234_140 Hb_002296_050 Hb_002296_050 Hb_021576_040--Hb_002296_050 Hb_000009_530 Hb_000009_530 Hb_021576_040--Hb_000009_530 Hb_000144_100 Hb_000144_100 Hb_021576_040--Hb_000144_100 Hb_000610_010 Hb_000610_010 Hb_021576_040--Hb_000610_010 Hb_000326_060 Hb_000326_060 Hb_003446_050--Hb_000326_060 Hb_132998_020 Hb_132998_020 Hb_003446_050--Hb_132998_020 Hb_007617_020 Hb_007617_020 Hb_003446_050--Hb_007617_020 Hb_079268_010 Hb_079268_010 Hb_003446_050--Hb_079268_010 Hb_064264_010 Hb_064264_010 Hb_003446_050--Hb_064264_010 Hb_002820_110 Hb_002820_110 Hb_000510_330--Hb_002820_110 Hb_000286_070 Hb_000286_070 Hb_000510_330--Hb_000286_070 Hb_000000_360 Hb_000000_360 Hb_000510_330--Hb_000000_360 Hb_000107_190 Hb_000107_190 Hb_000510_330--Hb_000107_190 Hb_017002_020 Hb_017002_020 Hb_000510_330--Hb_017002_020 Hb_002876_240 Hb_002876_240 Hb_000510_330--Hb_002876_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.712315 0.891007 0.835061 0.10239 0.417622 0.881079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.867253 1.3114 0 0.318387 0.10539

CAGE analysis