Hb_132998_020

Information

Type -
Description -
Location Contig132998: 4587-4938
Sequence    

Annotation

kegg
ID rcu:RCOM_1429400
description acyl carrier protein (EC:1.3.1.74)
nr
ID NP_001295608.1
description acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
swissprot
ID P25701
description Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=ACP2 PE=1 SV=2
trembl
ID A0A067JUC8
description Acyl carrier protein OS=Jatropha curcas GN=ACP PE=2 SV=1
Gene Ontology
ID GO:0016491
description acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132998_020 0.0 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
2 Hb_079268_010 0.1551952167 - - -
3 Hb_003446_050 0.1912147755 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
4 Hb_009780_080 0.2131164869 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_005690_020 0.2253413072 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
6 Hb_000326_060 0.2299968297 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_000454_060 0.2352627332 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
8 Hb_003312_010 0.2378669299 - - PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]
9 Hb_009265_090 0.2390616047 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
10 Hb_002896_080 0.2398101372 - - -
11 Hb_000317_400 0.2434662628 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
12 Hb_005568_080 0.2437285595 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003861_120 0.247555409 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
14 Hb_145979_010 0.2480656052 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
15 Hb_174865_030 0.2482395857 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
16 Hb_004230_040 0.2535058684 - - conserved hypothetical protein [Ricinus communis]
17 Hb_013839_010 0.2558970199 - - Angio-associated migratory cell protein, putative [Ricinus communis]
18 Hb_005333_150 0.2567601635 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
19 Hb_006775_090 0.2593035557 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
20 Hb_010710_020 0.2594195194 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]

Gene co-expression network

sample Hb_132998_020 Hb_132998_020 Hb_079268_010 Hb_079268_010 Hb_132998_020--Hb_079268_010 Hb_003446_050 Hb_003446_050 Hb_132998_020--Hb_003446_050 Hb_009780_080 Hb_009780_080 Hb_132998_020--Hb_009780_080 Hb_005690_020 Hb_005690_020 Hb_132998_020--Hb_005690_020 Hb_000326_060 Hb_000326_060 Hb_132998_020--Hb_000326_060 Hb_000454_060 Hb_000454_060 Hb_132998_020--Hb_000454_060 Hb_013839_010 Hb_013839_010 Hb_079268_010--Hb_013839_010 Hb_137068_010 Hb_137068_010 Hb_079268_010--Hb_137068_010 Hb_005568_080 Hb_005568_080 Hb_079268_010--Hb_005568_080 Hb_079268_010--Hb_003446_050 Hb_000317_400 Hb_000317_400 Hb_079268_010--Hb_000317_400 Hb_003446_050--Hb_000326_060 Hb_007617_020 Hb_007617_020 Hb_003446_050--Hb_007617_020 Hb_012033_020 Hb_012033_020 Hb_003446_050--Hb_012033_020 Hb_064264_010 Hb_064264_010 Hb_003446_050--Hb_064264_010 Hb_001507_100 Hb_001507_100 Hb_009780_080--Hb_001507_100 Hb_008983_010 Hb_008983_010 Hb_009780_080--Hb_008983_010 Hb_009780_080--Hb_079268_010 Hb_089497_010 Hb_089497_010 Hb_009780_080--Hb_089497_010 Hb_138585_110 Hb_138585_110 Hb_009780_080--Hb_138585_110 Hb_080147_090 Hb_080147_090 Hb_005690_020--Hb_080147_090 Hb_000331_310 Hb_000331_310 Hb_005690_020--Hb_000331_310 Hb_000331_320 Hb_000331_320 Hb_005690_020--Hb_000331_320 Hb_008667_050 Hb_008667_050 Hb_005690_020--Hb_008667_050 Hb_002821_010 Hb_002821_010 Hb_005690_020--Hb_002821_010 Hb_073973_110 Hb_073973_110 Hb_005690_020--Hb_073973_110 Hb_000326_060--Hb_005568_080 Hb_033772_050 Hb_033772_050 Hb_000326_060--Hb_033772_050 Hb_009265_090 Hb_009265_090 Hb_000326_060--Hb_009265_090 Hb_009486_190 Hb_009486_190 Hb_000326_060--Hb_009486_190 Hb_000264_090 Hb_000264_090 Hb_000326_060--Hb_000264_090 Hb_000363_140 Hb_000363_140 Hb_000326_060--Hb_000363_140 Hb_004525_060 Hb_004525_060 Hb_000454_060--Hb_004525_060 Hb_021888_050 Hb_021888_050 Hb_000454_060--Hb_021888_050 Hb_001504_120 Hb_001504_120 Hb_000454_060--Hb_001504_120 Hb_000454_060--Hb_009780_080 Hb_000454_060--Hb_000317_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51848 6.6561 2.96676 0 4.64431 4.87616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.596 18.2164 1.40708 10.4391 0

CAGE analysis