Hb_008983_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig8983: 1014-4541
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06650g
description POPTRDRAFT_178418; hypothetical protein
nr
ID XP_012073224.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LCH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61797: 505-708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008983_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_000116_230 0.2242795286 - - -
3 Hb_009780_080 0.2258624735 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_079268_010 0.2274247588 - - -
5 Hb_000109_240 0.2301464406 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
6 Hb_089497_010 0.231967607 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
7 Hb_027428_030 0.2364678342 - - unnamed protein product [Coffea canephora]
8 Hb_000061_350 0.2570023608 - - conserved hypothetical protein [Ricinus communis]
9 Hb_112023_010 0.2615347765 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
10 Hb_009222_020 0.2623969631 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
11 Hb_000567_040 0.2628362383 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
12 Hb_001507_100 0.2630700553 - - cytochrome P450, putative [Ricinus communis]
13 Hb_001902_190 0.2663870067 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
14 Hb_001495_060 0.2673476243 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
15 Hb_003106_070 0.271731042 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
16 Hb_004230_040 0.2718234359 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000087_050 0.273015827 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
18 Hb_000098_290 0.2752920131 - - -
19 Hb_001529_050 0.2765807192 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
20 Hb_001541_270 0.2786662558 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]

Gene co-expression network

sample Hb_008983_010 Hb_008983_010 Hb_000116_230 Hb_000116_230 Hb_008983_010--Hb_000116_230 Hb_009780_080 Hb_009780_080 Hb_008983_010--Hb_009780_080 Hb_079268_010 Hb_079268_010 Hb_008983_010--Hb_079268_010 Hb_000109_240 Hb_000109_240 Hb_008983_010--Hb_000109_240 Hb_089497_010 Hb_089497_010 Hb_008983_010--Hb_089497_010 Hb_027428_030 Hb_027428_030 Hb_008983_010--Hb_027428_030 Hb_000599_140 Hb_000599_140 Hb_000116_230--Hb_000599_140 Hb_010407_070 Hb_010407_070 Hb_000116_230--Hb_010407_070 Hb_000237_080 Hb_000237_080 Hb_000116_230--Hb_000237_080 Hb_001655_070 Hb_001655_070 Hb_000116_230--Hb_001655_070 Hb_002798_060 Hb_002798_060 Hb_000116_230--Hb_002798_060 Hb_008959_030 Hb_008959_030 Hb_000116_230--Hb_008959_030 Hb_132998_020 Hb_132998_020 Hb_009780_080--Hb_132998_020 Hb_001507_100 Hb_001507_100 Hb_009780_080--Hb_001507_100 Hb_009780_080--Hb_079268_010 Hb_009780_080--Hb_089497_010 Hb_138585_110 Hb_138585_110 Hb_009780_080--Hb_138585_110 Hb_079268_010--Hb_132998_020 Hb_013839_010 Hb_013839_010 Hb_079268_010--Hb_013839_010 Hb_137068_010 Hb_137068_010 Hb_079268_010--Hb_137068_010 Hb_005568_080 Hb_005568_080 Hb_079268_010--Hb_005568_080 Hb_003446_050 Hb_003446_050 Hb_079268_010--Hb_003446_050 Hb_000317_400 Hb_000317_400 Hb_079268_010--Hb_000317_400 Hb_002333_080 Hb_002333_080 Hb_000109_240--Hb_002333_080 Hb_000329_650 Hb_000329_650 Hb_000109_240--Hb_000329_650 Hb_000923_050 Hb_000923_050 Hb_000109_240--Hb_000923_050 Hb_001472_120 Hb_001472_120 Hb_000109_240--Hb_001472_120 Hb_011689_040 Hb_011689_040 Hb_000109_240--Hb_011689_040 Hb_001865_080 Hb_001865_080 Hb_000109_240--Hb_001865_080 Hb_111198_020 Hb_111198_020 Hb_089497_010--Hb_111198_020 Hb_112023_010 Hb_112023_010 Hb_089497_010--Hb_112023_010 Hb_002400_400 Hb_002400_400 Hb_089497_010--Hb_002400_400 Hb_004136_040 Hb_004136_040 Hb_089497_010--Hb_004136_040 Hb_166236_010 Hb_166236_010 Hb_089497_010--Hb_166236_010 Hb_004355_030 Hb_004355_030 Hb_089497_010--Hb_004355_030 Hb_000173_480 Hb_000173_480 Hb_027428_030--Hb_000173_480 Hb_000567_040 Hb_000567_040 Hb_027428_030--Hb_000567_040 Hb_002417_060 Hb_002417_060 Hb_027428_030--Hb_002417_060 Hb_020730_010 Hb_020730_010 Hb_027428_030--Hb_020730_010 Hb_002626_040 Hb_002626_040 Hb_027428_030--Hb_002626_040 Hb_010795_060 Hb_010795_060 Hb_027428_030--Hb_010795_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.195555 0.275146 0.0185932 0.0631808 0.18533 0.0713207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.38454 0.190529 0 0.226684 0

CAGE analysis