Hb_000109_240

Information

Type -
Description -
Location Contig109: 336205-348278
Sequence    

Annotation

kegg
ID cit:102615432
description uncharacterized LOC102615432
nr
ID XP_006484313.1
description PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
swissprot
ID Q945L4
description WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1
trembl
ID A0A067JP63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21790 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02731: 337001-339838 , PASA_asmbl_02732: 340434-340670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_240 0.0 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
2 Hb_002333_080 0.1496251608 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
3 Hb_000329_650 0.1533698401 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
4 Hb_000923_050 0.1680730821 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
5 Hb_001472_120 0.1683375788 - - -
6 Hb_011689_040 0.1687021014 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
7 Hb_001865_080 0.1781101303 - - enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
8 Hb_000318_100 0.1782136967 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
9 Hb_000162_170 0.1833460629 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
10 Hb_002301_360 0.1863541525 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
11 Hb_005056_060 0.1867222218 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
12 Hb_000317_400 0.1872605078 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
13 Hb_000107_410 0.1908862116 - - PREDICTED: expansin-A20 [Jatropha curcas]
14 Hb_000329_630 0.1930414857 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
15 Hb_001150_040 0.1941269766 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
16 Hb_009158_030 0.1947517204 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
17 Hb_000317_410 0.1947565183 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
18 Hb_001277_320 0.1948536454 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_001507_100 0.1952258805 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000441_150 0.1956881942 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_240 Hb_000109_240 Hb_002333_080 Hb_002333_080 Hb_000109_240--Hb_002333_080 Hb_000329_650 Hb_000329_650 Hb_000109_240--Hb_000329_650 Hb_000923_050 Hb_000923_050 Hb_000109_240--Hb_000923_050 Hb_001472_120 Hb_001472_120 Hb_000109_240--Hb_001472_120 Hb_011689_040 Hb_011689_040 Hb_000109_240--Hb_011689_040 Hb_001865_080 Hb_001865_080 Hb_000109_240--Hb_001865_080 Hb_000500_090 Hb_000500_090 Hb_002333_080--Hb_000500_090 Hb_004970_110 Hb_004970_110 Hb_002333_080--Hb_004970_110 Hb_003120_030 Hb_003120_030 Hb_002333_080--Hb_003120_030 Hb_001329_220 Hb_001329_220 Hb_002333_080--Hb_001329_220 Hb_007317_180 Hb_007317_180 Hb_002333_080--Hb_007317_180 Hb_011828_020 Hb_011828_020 Hb_002333_080--Hb_011828_020 Hb_000329_630 Hb_000329_630 Hb_000329_650--Hb_000329_630 Hb_000329_650--Hb_000923_050 Hb_000696_340 Hb_000696_340 Hb_000329_650--Hb_000696_340 Hb_005329_020 Hb_005329_020 Hb_000329_650--Hb_005329_020 Hb_005056_060 Hb_005056_060 Hb_000329_650--Hb_005056_060 Hb_000329_650--Hb_002333_080 Hb_000923_050--Hb_011828_020 Hb_000395_080 Hb_000395_080 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000923_050--Hb_000696_340 Hb_000923_050--Hb_002333_080 Hb_001279_140 Hb_001279_140 Hb_001472_120--Hb_001279_140 Hb_000483_360 Hb_000483_360 Hb_001472_120--Hb_000483_360 Hb_005539_030 Hb_005539_030 Hb_001472_120--Hb_005539_030 Hb_000003_480 Hb_000003_480 Hb_001472_120--Hb_000003_480 Hb_001936_020 Hb_001936_020 Hb_001472_120--Hb_001936_020 Hb_004577_020 Hb_004577_020 Hb_001472_120--Hb_004577_020 Hb_005215_030 Hb_005215_030 Hb_011689_040--Hb_005215_030 Hb_000522_080 Hb_000522_080 Hb_011689_040--Hb_000522_080 Hb_000162_170 Hb_000162_170 Hb_011689_040--Hb_000162_170 Hb_011689_040--Hb_000696_340 Hb_011689_040--Hb_000395_080 Hb_004242_080 Hb_004242_080 Hb_011689_040--Hb_004242_080 Hb_000230_270 Hb_000230_270 Hb_001865_080--Hb_000230_270 Hb_002636_080 Hb_002636_080 Hb_001865_080--Hb_002636_080 Hb_000317_400 Hb_000317_400 Hb_001865_080--Hb_000317_400 Hb_002301_360 Hb_002301_360 Hb_001865_080--Hb_002301_360 Hb_001439_100 Hb_001439_100 Hb_001865_080--Hb_001439_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92821 1.33946 0.19822 0.930276 0.970113 1.03095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29592 1.337 0.69599 2.77772 0.224767

CAGE analysis