Hb_000162_170

Information

Type -
Description -
Location Contig162: 221892-225488
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17870g
description POPTRDRAFT_556617; hypothetical protein
nr
ID XP_012081739.1
description PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
swissprot
ID O82368
description Uncharacterized protein At2g29880 OS=Arabidopsis thaliana GN=At2g29880 PE=2 SV=1
trembl
ID A0A067K3I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18785 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14582: 222119-222651 , PASA_asmbl_14583: 224234-225401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_170 0.0 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
2 Hb_000500_090 0.093299729 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
3 Hb_005215_030 0.1068300966 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
4 Hb_011689_040 0.1100323868 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
5 Hb_007254_040 0.1171605116 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
6 Hb_011310_190 0.1182832842 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
7 Hb_001221_410 0.1225840823 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
8 Hb_005539_030 0.1231294918 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
9 Hb_000395_080 0.1267106579 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
10 Hb_007317_180 0.1270012473 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
11 Hb_002027_070 0.1277010874 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
12 Hb_004970_110 0.1283835862 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
13 Hb_008554_020 0.1315624032 - - -
14 Hb_001329_220 0.1320940755 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000003_480 0.1340080274 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
16 Hb_002333_080 0.1352882742 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
17 Hb_009158_030 0.1366341447 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
18 Hb_001472_120 0.1370265114 - - -
19 Hb_000169_010 0.1373898197 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
20 Hb_000483_360 0.1375977435 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_170 Hb_000162_170 Hb_000500_090 Hb_000500_090 Hb_000162_170--Hb_000500_090 Hb_005215_030 Hb_005215_030 Hb_000162_170--Hb_005215_030 Hb_011689_040 Hb_011689_040 Hb_000162_170--Hb_011689_040 Hb_007254_040 Hb_007254_040 Hb_000162_170--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_000162_170--Hb_011310_190 Hb_001221_410 Hb_001221_410 Hb_000162_170--Hb_001221_410 Hb_001329_220 Hb_001329_220 Hb_000500_090--Hb_001329_220 Hb_002333_080 Hb_002333_080 Hb_000500_090--Hb_002333_080 Hb_007317_180 Hb_007317_180 Hb_000500_090--Hb_007317_180 Hb_000500_090--Hb_007254_040 Hb_004970_110 Hb_004970_110 Hb_000500_090--Hb_004970_110 Hb_000483_360 Hb_000483_360 Hb_005215_030--Hb_000483_360 Hb_005215_030--Hb_011689_040 Hb_000395_080 Hb_000395_080 Hb_005215_030--Hb_000395_080 Hb_005539_030 Hb_005539_030 Hb_005215_030--Hb_005539_030 Hb_000556_020 Hb_000556_020 Hb_005215_030--Hb_000556_020 Hb_003728_030 Hb_003728_030 Hb_005215_030--Hb_003728_030 Hb_000522_080 Hb_000522_080 Hb_011689_040--Hb_000522_080 Hb_000696_340 Hb_000696_340 Hb_011689_040--Hb_000696_340 Hb_011689_040--Hb_000395_080 Hb_004242_080 Hb_004242_080 Hb_011689_040--Hb_004242_080 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_007317_180 Hb_000169_010 Hb_000169_010 Hb_007254_040--Hb_000169_010 Hb_007254_040--Hb_011310_190 Hb_007254_040--Hb_004970_110 Hb_001135_050 Hb_001135_050 Hb_007254_040--Hb_001135_050 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_011310_190--Hb_007317_180 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090 Hb_001221_410--Hb_007254_040 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_001221_410--Hb_000169_010 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.54518 1.54183 0.409006 2.19775 3.79161 3.95441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.40765 2.57249 1.93747 2.8497 0.550229

CAGE analysis