Hb_001865_080

Information

Type -
Description -
Location Contig1865: 122300-123019
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21490g
description POPTRDRAFT_770389; enoyl-CoA hydratase/isomerase family protein
nr
ID XP_002316298.1
description enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
swissprot
ID O04469
description Enoyl-CoA delta isomerase 1, peroxisomal OS=Arabidopsis thaliana GN=ECI1 PE=1 SV=1
trembl
ID B9HTL0
description Enoyl-CoA hydratase/isomerase family protein OS=Populus trichocarpa GN=POPTR_0010s21490g PE=4 SV=1
Gene Ontology
ID GO:0005777
description carnitine isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18428: 122200-123139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001865_080 0.0 - - enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
2 Hb_000230_270 0.1547312872 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
3 Hb_002636_080 0.1652089255 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
4 Hb_000109_240 0.1781101303 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
5 Hb_000317_400 0.1847327939 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
6 Hb_002301_360 0.1890814617 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
7 Hb_001439_100 0.1894707955 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
8 Hb_001047_150 0.1894864736 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
9 Hb_115241_010 0.1921415895 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
10 Hb_000446_030 0.1921612134 - - amino acid binding protein, putative [Ricinus communis]
11 Hb_000329_650 0.1951548977 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
12 Hb_021056_020 0.2035139035 - - plasma membrane H+-ATPase [Hevea brasiliensis]
13 Hb_002341_020 0.2037363237 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
14 Hb_115825_010 0.2043820756 - - phosphate transporter [Manihot esculenta]
15 Hb_000506_120 0.2048927241 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
16 Hb_000318_100 0.2064032924 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
17 Hb_001481_120 0.2067244666 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
18 Hb_000041_240 0.2096068465 - - glutaredoxin [Hevea brasiliensis]
19 Hb_000923_050 0.2110512629 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
20 Hb_011689_040 0.2118281551 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001865_080 Hb_001865_080 Hb_000230_270 Hb_000230_270 Hb_001865_080--Hb_000230_270 Hb_002636_080 Hb_002636_080 Hb_001865_080--Hb_002636_080 Hb_000109_240 Hb_000109_240 Hb_001865_080--Hb_000109_240 Hb_000317_400 Hb_000317_400 Hb_001865_080--Hb_000317_400 Hb_002301_360 Hb_002301_360 Hb_001865_080--Hb_002301_360 Hb_001439_100 Hb_001439_100 Hb_001865_080--Hb_001439_100 Hb_000230_270--Hb_001439_100 Hb_000329_630 Hb_000329_630 Hb_000230_270--Hb_000329_630 Hb_000347_030 Hb_000347_030 Hb_000230_270--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_000230_270--Hb_000125_190 Hb_029584_050 Hb_029584_050 Hb_000230_270--Hb_029584_050 Hb_000446_030 Hb_000446_030 Hb_000230_270--Hb_000446_030 Hb_002341_020 Hb_002341_020 Hb_002636_080--Hb_002341_020 Hb_003442_070 Hb_003442_070 Hb_002636_080--Hb_003442_070 Hb_000390_140 Hb_000390_140 Hb_002636_080--Hb_000390_140 Hb_000841_060 Hb_000841_060 Hb_002636_080--Hb_000841_060 Hb_005285_030 Hb_005285_030 Hb_002636_080--Hb_005285_030 Hb_034688_020 Hb_034688_020 Hb_002636_080--Hb_034688_020 Hb_002333_080 Hb_002333_080 Hb_000109_240--Hb_002333_080 Hb_000329_650 Hb_000329_650 Hb_000109_240--Hb_000329_650 Hb_000923_050 Hb_000923_050 Hb_000109_240--Hb_000923_050 Hb_001472_120 Hb_001472_120 Hb_000109_240--Hb_001472_120 Hb_011689_040 Hb_011689_040 Hb_000109_240--Hb_011689_040 Hb_000329_250 Hb_000329_250 Hb_000317_400--Hb_000329_250 Hb_000317_400--Hb_000923_050 Hb_001136_010 Hb_001136_010 Hb_000317_400--Hb_001136_010 Hb_000742_110 Hb_000742_110 Hb_000317_400--Hb_000742_110 Hb_001824_010 Hb_001824_010 Hb_000317_400--Hb_001824_010 Hb_001277_320 Hb_001277_320 Hb_000317_400--Hb_001277_320 Hb_002301_360--Hb_000109_240 Hb_004734_040 Hb_004734_040 Hb_002301_360--Hb_004734_040 Hb_000903_060 Hb_000903_060 Hb_002301_360--Hb_000903_060 Hb_000923_090 Hb_000923_090 Hb_002301_360--Hb_000923_090 Hb_001476_060 Hb_001476_060 Hb_002301_360--Hb_001476_060 Hb_005054_290 Hb_005054_290 Hb_001439_100--Hb_005054_290 Hb_001439_100--Hb_000329_630 Hb_001439_100--Hb_029584_050 Hb_000015_040 Hb_000015_040 Hb_001439_100--Hb_000015_040 Hb_000000_460 Hb_000000_460 Hb_001439_100--Hb_000000_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.36611 21.2964 7.9937 16.5979 8.93084 11.3521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.8626 17.4955 15.439 27.9175 1.57819

CAGE analysis