Hb_001476_060

Information

Type -
Description -
Location Contig1476: 44511-47478
Sequence    

Annotation

kegg
ID rcu:RCOM_1622050
description hypothetical protein
nr
ID XP_012067726.1
description PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID A0A067LB04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12027: 44603-47648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001476_060 0.0 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
2 Hb_004429_090 0.1072104523 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
3 Hb_002675_140 0.1110108087 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
4 Hb_001369_250 0.1172557044 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
5 Hb_001104_230 0.1202240222 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
6 Hb_000034_070 0.1203508616 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
7 Hb_001104_100 0.1244869101 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
8 Hb_000221_240 0.1254294933 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
9 Hb_007545_120 0.1314242314 - - NADH:cytochrome b5 reductase [Vernicia fordii]
10 Hb_001332_040 0.1414982194 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
11 Hb_000115_150 0.1433199853 - - PREDICTED: IST1 homolog [Jatropha curcas]
12 Hb_000684_520 0.1439514429 - - glutathione S-transferase L3-like [Jatropha curcas]
13 Hb_010560_050 0.1485524117 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
14 Hb_001085_240 0.1509099005 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
15 Hb_062537_010 0.1519399575 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
16 Hb_000555_100 0.1522504365 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
17 Hb_008226_070 0.1542549344 - - PREDICTED: expansin-A8 [Jatropha curcas]
18 Hb_009193_090 0.1557650851 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
19 Hb_009898_040 0.1566434695 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000975_350 0.1567949414 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_001476_060 Hb_001476_060 Hb_004429_090 Hb_004429_090 Hb_001476_060--Hb_004429_090 Hb_002675_140 Hb_002675_140 Hb_001476_060--Hb_002675_140 Hb_001369_250 Hb_001369_250 Hb_001476_060--Hb_001369_250 Hb_001104_230 Hb_001104_230 Hb_001476_060--Hb_001104_230 Hb_000034_070 Hb_000034_070 Hb_001476_060--Hb_000034_070 Hb_001104_100 Hb_001104_100 Hb_001476_060--Hb_001104_100 Hb_004429_090--Hb_001104_230 Hb_010560_050 Hb_010560_050 Hb_004429_090--Hb_010560_050 Hb_004429_090--Hb_001369_250 Hb_000684_520 Hb_000684_520 Hb_004429_090--Hb_000684_520 Hb_001623_060 Hb_001623_060 Hb_004429_090--Hb_001623_060 Hb_002675_140--Hb_000034_070 Hb_001085_240 Hb_001085_240 Hb_002675_140--Hb_001085_240 Hb_002675_140--Hb_001369_250 Hb_003633_050 Hb_003633_050 Hb_002675_140--Hb_003633_050 Hb_002675_140--Hb_001104_100 Hb_000181_050 Hb_000181_050 Hb_002675_140--Hb_000181_050 Hb_010174_150 Hb_010174_150 Hb_001369_250--Hb_010174_150 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_000025_190 Hb_000025_190 Hb_001104_230--Hb_000025_190 Hb_001221_020 Hb_001221_020 Hb_001104_230--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_001104_230--Hb_003776_060 Hb_062537_010 Hb_062537_010 Hb_001104_230--Hb_062537_010 Hb_004880_150 Hb_004880_150 Hb_001104_230--Hb_004880_150 Hb_000331_180 Hb_000331_180 Hb_000034_070--Hb_000331_180 Hb_001348_020 Hb_001348_020 Hb_000034_070--Hb_001348_020 Hb_001366_370 Hb_001366_370 Hb_000034_070--Hb_001366_370 Hb_073973_100 Hb_073973_100 Hb_000034_070--Hb_073973_100 Hb_000034_070--Hb_000181_050 Hb_000115_150 Hb_000115_150 Hb_001104_100--Hb_000115_150 Hb_001104_100--Hb_001085_240 Hb_001104_100--Hb_001104_230 Hb_000094_210 Hb_000094_210 Hb_001104_100--Hb_000094_210 Hb_002093_060 Hb_002093_060 Hb_001104_100--Hb_002093_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24335 2.53618 7.74785 16.8422 2.82534 3.98087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7874 7.613 5.6725 19.089 4.52683

CAGE analysis