Hb_000567_040

Information

Type -
Description -
Location Contig567: 83344-87209
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05440g
description POPTRDRAFT_817818; hypothetical protein
nr
ID XP_012091758.1
description PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9H2J5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05440g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_040 0.0 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
2 Hb_000627_100 0.2041555479 - - -
3 Hb_027428_030 0.2167827922 - - unnamed protein product [Coffea canephora]
4 Hb_001860_010 0.2415509963 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_000237_130 0.2529211695 - - -
6 Hb_008983_010 0.2628362383 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_010913_010 0.2638785907 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
8 Hb_000098_290 0.2657320046 - - -
9 Hb_000275_040 0.2769635673 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_148891_010 0.2795324163 - - -
11 Hb_002400_360 0.2842415898 - - heparanase, putative [Ricinus communis]
12 Hb_032202_030 0.2861764327 - - -
13 Hb_000252_150 0.2921112548 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001860_020 0.2925572968 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
15 Hb_006949_020 0.2931432978 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
16 Hb_002546_020 0.2940725425 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
17 Hb_000803_040 0.2963423667 - - -
18 Hb_000826_060 0.299242005 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_000670_030 0.3014374343 - - -
20 Hb_079733_010 0.3015621449 - - -

Gene co-expression network

sample Hb_000567_040 Hb_000567_040 Hb_000627_100 Hb_000627_100 Hb_000567_040--Hb_000627_100 Hb_027428_030 Hb_027428_030 Hb_000567_040--Hb_027428_030 Hb_001860_010 Hb_001860_010 Hb_000567_040--Hb_001860_010 Hb_000237_130 Hb_000237_130 Hb_000567_040--Hb_000237_130 Hb_008983_010 Hb_008983_010 Hb_000567_040--Hb_008983_010 Hb_010913_010 Hb_010913_010 Hb_000567_040--Hb_010913_010 Hb_000627_100--Hb_027428_030 Hb_000826_060 Hb_000826_060 Hb_000627_100--Hb_000826_060 Hb_018599_010 Hb_018599_010 Hb_000627_100--Hb_018599_010 Hb_002232_280 Hb_002232_280 Hb_000627_100--Hb_002232_280 Hb_036227_010 Hb_036227_010 Hb_000627_100--Hb_036227_010 Hb_000173_480 Hb_000173_480 Hb_027428_030--Hb_000173_480 Hb_002417_060 Hb_002417_060 Hb_027428_030--Hb_002417_060 Hb_020730_010 Hb_020730_010 Hb_027428_030--Hb_020730_010 Hb_002626_040 Hb_002626_040 Hb_027428_030--Hb_002626_040 Hb_010795_060 Hb_010795_060 Hb_027428_030--Hb_010795_060 Hb_018790_080 Hb_018790_080 Hb_001860_010--Hb_018790_080 Hb_000627_090 Hb_000627_090 Hb_001860_010--Hb_000627_090 Hb_002316_040 Hb_002316_040 Hb_001860_010--Hb_002316_040 Hb_005701_080 Hb_005701_080 Hb_001860_010--Hb_005701_080 Hb_000997_110 Hb_000997_110 Hb_001860_010--Hb_000997_110 Hb_000078_050 Hb_000078_050 Hb_000237_130--Hb_000078_050 Hb_000122_250 Hb_000122_250 Hb_000237_130--Hb_000122_250 Hb_002400_360 Hb_002400_360 Hb_000237_130--Hb_002400_360 Hb_000538_010 Hb_000538_010 Hb_000237_130--Hb_000538_010 Hb_002609_090 Hb_002609_090 Hb_000237_130--Hb_002609_090 Hb_001414_140 Hb_001414_140 Hb_000237_130--Hb_001414_140 Hb_000116_230 Hb_000116_230 Hb_008983_010--Hb_000116_230 Hb_009780_080 Hb_009780_080 Hb_008983_010--Hb_009780_080 Hb_079268_010 Hb_079268_010 Hb_008983_010--Hb_079268_010 Hb_000109_240 Hb_000109_240 Hb_008983_010--Hb_000109_240 Hb_089497_010 Hb_089497_010 Hb_008983_010--Hb_089497_010 Hb_008983_010--Hb_027428_030 Hb_155541_010 Hb_155541_010 Hb_010913_010--Hb_155541_010 Hb_006907_100 Hb_006907_100 Hb_010913_010--Hb_006907_100 Hb_000099_230 Hb_000099_230 Hb_010913_010--Hb_000099_230 Hb_011485_090 Hb_011485_090 Hb_010913_010--Hb_011485_090 Hb_004846_100 Hb_004846_100 Hb_010913_010--Hb_004846_100 Hb_118228_010 Hb_118228_010 Hb_010913_010--Hb_118228_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.346778 2.03999 0.449268 0.474083 1.47765 0.119248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53839 1.05383 0 0.313795 0

CAGE analysis