Hb_000627_090

Information

Type -
Description -
Location Contig627: 118255-119267
Sequence    

Annotation

kegg
ID rcu:RCOM_0175450
description hypothetical protein
nr
ID XP_002527510.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNE1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51699: 118231-119397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001246_120 0.1926558996 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
3 Hb_018790_080 0.1927016541 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
4 Hb_004218_120 0.2006285391 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
5 Hb_001507_030 0.2034026748 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
6 Hb_003020_180 0.2039135568 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
7 Hb_002431_010 0.2090319352 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
8 Hb_005663_070 0.2103687267 - - dehydrin protein [Manihot esculenta]
9 Hb_001769_110 0.2120653425 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
10 Hb_005714_100 0.2122195412 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
11 Hb_002869_050 0.213974263 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
12 Hb_124677_040 0.2155075774 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
13 Hb_004108_240 0.2159112428 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
14 Hb_001376_010 0.2168986306 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
15 Hb_001818_060 0.2189071816 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
16 Hb_012107_010 0.2202008827 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
17 Hb_001511_190 0.2203069912 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
18 Hb_000122_050 0.220404525 - - conserved hypothetical protein [Ricinus communis]
19 Hb_084849_010 0.221432265 - - conserved hypothetical protein [Ricinus communis]
20 Hb_018691_020 0.2215065198 - - -

Gene co-expression network

sample Hb_000627_090 Hb_000627_090 Hb_001246_120 Hb_001246_120 Hb_000627_090--Hb_001246_120 Hb_018790_080 Hb_018790_080 Hb_000627_090--Hb_018790_080 Hb_004218_120 Hb_004218_120 Hb_000627_090--Hb_004218_120 Hb_001507_030 Hb_001507_030 Hb_000627_090--Hb_001507_030 Hb_003020_180 Hb_003020_180 Hb_000627_090--Hb_003020_180 Hb_002431_010 Hb_002431_010 Hb_000627_090--Hb_002431_010 Hb_004917_040 Hb_004917_040 Hb_001246_120--Hb_004917_040 Hb_021443_090 Hb_021443_090 Hb_001246_120--Hb_021443_090 Hb_000258_370 Hb_000258_370 Hb_001246_120--Hb_000258_370 Hb_138585_100 Hb_138585_100 Hb_001246_120--Hb_138585_100 Hb_006711_070 Hb_006711_070 Hb_001246_120--Hb_006711_070 Hb_004108_240 Hb_004108_240 Hb_001246_120--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_018790_080--Hb_000925_030 Hb_018790_080--Hb_004108_240 Hb_000699_210 Hb_000699_210 Hb_018790_080--Hb_000699_210 Hb_006935_010 Hb_006935_010 Hb_018790_080--Hb_006935_010 Hb_005539_020 Hb_005539_020 Hb_018790_080--Hb_005539_020 Hb_003147_060 Hb_003147_060 Hb_018790_080--Hb_003147_060 Hb_000203_270 Hb_000203_270 Hb_004218_120--Hb_000203_270 Hb_002325_060 Hb_002325_060 Hb_004218_120--Hb_002325_060 Hb_001135_030 Hb_001135_030 Hb_004218_120--Hb_001135_030 Hb_002849_070 Hb_002849_070 Hb_004218_120--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_004218_120--Hb_000200_170 Hb_002876_210 Hb_002876_210 Hb_004218_120--Hb_002876_210 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_005663_070 Hb_005663_070 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260 Hb_002639_100 Hb_002639_100 Hb_003020_180--Hb_002639_100 Hb_003020_180--Hb_006935_010 Hb_005779_030 Hb_005779_030 Hb_003020_180--Hb_005779_030 Hb_003687_030 Hb_003687_030 Hb_003020_180--Hb_003687_030 Hb_012258_020 Hb_012258_020 Hb_002431_010--Hb_012258_020 Hb_003835_090 Hb_003835_090 Hb_002431_010--Hb_003835_090 Hb_002431_010--Hb_006711_070 Hb_055488_020 Hb_055488_020 Hb_002431_010--Hb_055488_020 Hb_030312_010 Hb_030312_010 Hb_002431_010--Hb_030312_010 Hb_170674_010 Hb_170674_010 Hb_002431_010--Hb_170674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.724279 6.41433 2.13133 5.17726 0.99398 0.546747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63018 2.2977 0.103317 0.675722 0.687576

CAGE analysis