Hb_001860_010

Information

Type -
Description -
Location Contig1860: 16153-19383
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0003824
description lrr receptor-like serine threonine-protein kinase gso1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001860_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_018790_080 0.2287114186 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
3 Hb_000627_090 0.2380817238 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002316_040 0.2399761862 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
5 Hb_000567_040 0.2415509963 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
6 Hb_005701_080 0.2498817824 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000997_110 0.2567387515 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
8 Hb_000272_120 0.2637928133 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
9 Hb_003494_060 0.2654206285 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
10 Hb_006111_030 0.2667461607 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
11 Hb_013818_040 0.2677435046 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
12 Hb_005539_020 0.2696556041 - - -
13 Hb_000809_080 0.2697724581 - - 50S ribosomal protein L25, putative [Ricinus communis]
14 Hb_001205_030 0.2697787386 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
15 Hb_000976_290 0.2722130522 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
16 Hb_005400_040 0.2732772623 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
17 Hb_000256_130 0.2737994942 - - hypothetical protein 21 [Hevea brasiliensis]
18 Hb_002835_260 0.2757474957 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
19 Hb_020400_040 0.276182875 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
20 Hb_003376_310 0.2762533153 - - hypothetical protein JCGZ_16500 [Jatropha curcas]

Gene co-expression network

sample Hb_001860_010 Hb_001860_010 Hb_018790_080 Hb_018790_080 Hb_001860_010--Hb_018790_080 Hb_000627_090 Hb_000627_090 Hb_001860_010--Hb_000627_090 Hb_002316_040 Hb_002316_040 Hb_001860_010--Hb_002316_040 Hb_000567_040 Hb_000567_040 Hb_001860_010--Hb_000567_040 Hb_005701_080 Hb_005701_080 Hb_001860_010--Hb_005701_080 Hb_000997_110 Hb_000997_110 Hb_001860_010--Hb_000997_110 Hb_000925_030 Hb_000925_030 Hb_018790_080--Hb_000925_030 Hb_004108_240 Hb_004108_240 Hb_018790_080--Hb_004108_240 Hb_000699_210 Hb_000699_210 Hb_018790_080--Hb_000699_210 Hb_006935_010 Hb_006935_010 Hb_018790_080--Hb_006935_010 Hb_005539_020 Hb_005539_020 Hb_018790_080--Hb_005539_020 Hb_003147_060 Hb_003147_060 Hb_018790_080--Hb_003147_060 Hb_001246_120 Hb_001246_120 Hb_000627_090--Hb_001246_120 Hb_000627_090--Hb_018790_080 Hb_004218_120 Hb_004218_120 Hb_000627_090--Hb_004218_120 Hb_001507_030 Hb_001507_030 Hb_000627_090--Hb_001507_030 Hb_003020_180 Hb_003020_180 Hb_000627_090--Hb_003020_180 Hb_002431_010 Hb_002431_010 Hb_000627_090--Hb_002431_010 Hb_001059_020 Hb_001059_020 Hb_002316_040--Hb_001059_020 Hb_000186_210 Hb_000186_210 Hb_002316_040--Hb_000186_210 Hb_013818_040 Hb_013818_040 Hb_002316_040--Hb_013818_040 Hb_000272_120 Hb_000272_120 Hb_002316_040--Hb_000272_120 Hb_004732_010 Hb_004732_010 Hb_002316_040--Hb_004732_010 Hb_000627_100 Hb_000627_100 Hb_000567_040--Hb_000627_100 Hb_027428_030 Hb_027428_030 Hb_000567_040--Hb_027428_030 Hb_000237_130 Hb_000237_130 Hb_000567_040--Hb_000237_130 Hb_008983_010 Hb_008983_010 Hb_000567_040--Hb_008983_010 Hb_010913_010 Hb_010913_010 Hb_000567_040--Hb_010913_010 Hb_003120_050 Hb_003120_050 Hb_005701_080--Hb_003120_050 Hb_028207_040 Hb_028207_040 Hb_005701_080--Hb_028207_040 Hb_000866_210 Hb_000866_210 Hb_005701_080--Hb_000866_210 Hb_001205_030 Hb_001205_030 Hb_005701_080--Hb_001205_030 Hb_022693_050 Hb_022693_050 Hb_005701_080--Hb_022693_050 Hb_006111_030 Hb_006111_030 Hb_005701_080--Hb_006111_030 Hb_003371_120 Hb_003371_120 Hb_000997_110--Hb_003371_120 Hb_005400_040 Hb_005400_040 Hb_000997_110--Hb_005400_040 Hb_000010_350 Hb_000010_350 Hb_000997_110--Hb_000010_350 Hb_005147_040 Hb_005147_040 Hb_000997_110--Hb_005147_040 Hb_000976_290 Hb_000976_290 Hb_000997_110--Hb_000976_290 Hb_002918_150 Hb_002918_150 Hb_000997_110--Hb_002918_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0425002 0.559015 0.0677334 0.107647 0.0857355 0.0218296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227993 0.0844311 0 0.0669474 0.0225471

CAGE analysis