Hb_000237_130

Information

Type -
Description -
Location Contig237: 155803-156078
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0000166
description rna-binding protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_130 0.0 - - -
2 Hb_000078_050 0.2352185039 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
3 Hb_000122_250 0.2365187291 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
4 Hb_002400_360 0.2370695513 - - heparanase, putative [Ricinus communis]
5 Hb_000538_010 0.2450983273 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
6 Hb_002609_090 0.2457747781 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_001414_140 0.2521808203 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
8 Hb_000028_420 0.2527261422 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
9 Hb_000567_040 0.2529211695 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
10 Hb_002999_060 0.2543508199 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
11 Hb_001660_090 0.2552223602 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
12 Hb_013394_060 0.2553138755 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
13 Hb_000152_510 0.2564325122 - - kinase, putative [Ricinus communis]
14 Hb_000051_050 0.2619547379 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
15 Hb_023001_070 0.2639086687 - - PREDICTED: dnaJ protein ERDJ3A-like [Eucalyptus grandis]
16 Hb_001189_130 0.2642019702 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
17 Hb_004336_040 0.2664571761 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_002400_350 0.2685288502 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_004449_050 0.2696725032 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
20 Hb_002700_080 0.2737808404 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]

Gene co-expression network

sample Hb_000237_130 Hb_000237_130 Hb_000078_050 Hb_000078_050 Hb_000237_130--Hb_000078_050 Hb_000122_250 Hb_000122_250 Hb_000237_130--Hb_000122_250 Hb_002400_360 Hb_002400_360 Hb_000237_130--Hb_002400_360 Hb_000538_010 Hb_000538_010 Hb_000237_130--Hb_000538_010 Hb_002609_090 Hb_002609_090 Hb_000237_130--Hb_002609_090 Hb_001414_140 Hb_001414_140 Hb_000237_130--Hb_001414_140 Hb_000010_250 Hb_000010_250 Hb_000078_050--Hb_000010_250 Hb_000432_040 Hb_000432_040 Hb_000078_050--Hb_000432_040 Hb_002435_110 Hb_002435_110 Hb_000078_050--Hb_002435_110 Hb_000028_420 Hb_000028_420 Hb_000078_050--Hb_000028_420 Hb_006949_020 Hb_006949_020 Hb_000078_050--Hb_006949_020 Hb_004336_040 Hb_004336_040 Hb_000078_050--Hb_004336_040 Hb_013394_060 Hb_013394_060 Hb_000122_250--Hb_013394_060 Hb_002344_090 Hb_002344_090 Hb_000122_250--Hb_002344_090 Hb_002999_060 Hb_002999_060 Hb_000122_250--Hb_002999_060 Hb_000720_070 Hb_000720_070 Hb_000122_250--Hb_000720_070 Hb_003517_060 Hb_003517_060 Hb_000122_250--Hb_003517_060 Hb_000122_250--Hb_000538_010 Hb_000526_030 Hb_000526_030 Hb_002400_360--Hb_000526_030 Hb_005539_020 Hb_005539_020 Hb_002400_360--Hb_005539_020 Hb_000169_170 Hb_000169_170 Hb_002400_360--Hb_000169_170 Hb_000023_350 Hb_000023_350 Hb_002400_360--Hb_000023_350 Hb_127599_010 Hb_127599_010 Hb_002400_360--Hb_127599_010 Hb_130389_010 Hb_130389_010 Hb_002400_360--Hb_130389_010 Hb_001307_010 Hb_001307_010 Hb_000538_010--Hb_001307_010 Hb_031711_010 Hb_031711_010 Hb_000538_010--Hb_031711_010 Hb_000390_220 Hb_000390_220 Hb_000538_010--Hb_000390_220 Hb_000538_010--Hb_013394_060 Hb_000920_250 Hb_000920_250 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130 Hb_003633_140 Hb_003633_140 Hb_002609_090--Hb_003633_140 Hb_164010_070 Hb_164010_070 Hb_002609_090--Hb_164010_070 Hb_000340_110 Hb_000340_110 Hb_002609_090--Hb_000340_110 Hb_000032_310 Hb_000032_310 Hb_002609_090--Hb_000032_310 Hb_144824_010 Hb_144824_010 Hb_002609_090--Hb_144824_010 Hb_006683_040 Hb_006683_040 Hb_002609_090--Hb_006683_040 Hb_000152_340 Hb_000152_340 Hb_001414_140--Hb_000152_340 Hb_009178_020 Hb_009178_020 Hb_001414_140--Hb_009178_020 Hb_000953_030 Hb_000953_030 Hb_001414_140--Hb_000953_030 Hb_001902_060 Hb_001902_060 Hb_001414_140--Hb_001902_060 Hb_001414_140--Hb_000538_010 Hb_001638_160 Hb_001638_160 Hb_001414_140--Hb_001638_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.482008 4.3856 0.579514 0.87025 4.43424 0.387825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.933572 1.47445 0.500093 1.37615 0

CAGE analysis