Hb_000186_210

Information

Type transcription factor
Description TF Family: HB
Location Contig186: 274054-279879
Sequence    

Annotation

kegg
ID rcu:RCOM_0903280
description homeobox protein knotted-1, putative
nr
ID XP_002518420.1
description homeobox protein knotted-1, putative [Ricinus communis]
swissprot
ID P46608
description Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1
trembl
ID B9RXF1
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_0903280 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein sbh1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18240: 275613-279515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_210 0.0 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
2 Hb_001189_060 0.2191337773 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_006907_120 0.2431022477 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
4 Hb_002316_040 0.2631952022 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
5 Hb_003018_070 0.2704392876 - - SAUR family protein, partial [Theobroma cacao]
6 Hb_006096_010 0.2756724947 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008864_070 0.2790827693 - - PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
8 Hb_003100_010 0.2824099116 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
9 Hb_007105_010 0.2869018691 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
10 Hb_001059_020 0.2882408737 - - PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
11 Hb_002063_030 0.2983336503 - - -
12 Hb_001902_150 0.2996468921 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
13 Hb_010288_040 0.2999414482 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
14 Hb_000482_060 0.304566532 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
15 Hb_007218_140 0.3053492557 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
16 Hb_001863_440 0.3086154945 - - Nodulin-26, putative [Ricinus communis]
17 Hb_001860_010 0.3096598973 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000077_240 0.3114403299 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
19 Hb_006502_050 0.3223309683 - - -
20 Hb_004732_010 0.327574323 - - -

Gene co-expression network

sample Hb_000186_210 Hb_000186_210 Hb_001189_060 Hb_001189_060 Hb_000186_210--Hb_001189_060 Hb_006907_120 Hb_006907_120 Hb_000186_210--Hb_006907_120 Hb_002316_040 Hb_002316_040 Hb_000186_210--Hb_002316_040 Hb_003018_070 Hb_003018_070 Hb_000186_210--Hb_003018_070 Hb_006096_010 Hb_006096_010 Hb_000186_210--Hb_006096_010 Hb_008864_070 Hb_008864_070 Hb_000186_210--Hb_008864_070 Hb_001189_060--Hb_003018_070 Hb_002063_030 Hb_002063_030 Hb_001189_060--Hb_002063_030 Hb_001189_060--Hb_006907_120 Hb_007105_010 Hb_007105_010 Hb_001189_060--Hb_007105_010 Hb_001902_150 Hb_001902_150 Hb_001189_060--Hb_001902_150 Hb_006907_120--Hb_007105_010 Hb_000077_240 Hb_000077_240 Hb_006907_120--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_006907_120--Hb_003398_030 Hb_010288_040 Hb_010288_040 Hb_006907_120--Hb_010288_040 Hb_001860_010 Hb_001860_010 Hb_002316_040--Hb_001860_010 Hb_001059_020 Hb_001059_020 Hb_002316_040--Hb_001059_020 Hb_013818_040 Hb_013818_040 Hb_002316_040--Hb_013818_040 Hb_000272_120 Hb_000272_120 Hb_002316_040--Hb_000272_120 Hb_004732_010 Hb_004732_010 Hb_002316_040--Hb_004732_010 Hb_000275_070 Hb_000275_070 Hb_003018_070--Hb_000275_070 Hb_009252_120 Hb_009252_120 Hb_003018_070--Hb_009252_120 Hb_003018_070--Hb_001902_150 Hb_002211_040 Hb_002211_040 Hb_003018_070--Hb_002211_040 Hb_020400_040 Hb_020400_040 Hb_006096_010--Hb_020400_040 Hb_002272_010 Hb_002272_010 Hb_006096_010--Hb_002272_010 Hb_002110_240 Hb_002110_240 Hb_006096_010--Hb_002110_240 Hb_002205_010 Hb_002205_010 Hb_006096_010--Hb_002205_010 Hb_006096_010--Hb_008864_070 Hb_009233_030 Hb_009233_030 Hb_006096_010--Hb_009233_030 Hb_005701_030 Hb_005701_030 Hb_008864_070--Hb_005701_030 Hb_001863_440 Hb_001863_440 Hb_008864_070--Hb_001863_440 Hb_008864_070--Hb_001902_150 Hb_000167_020 Hb_000167_020 Hb_008864_070--Hb_000167_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.260963 10.9867 0.00670269 0.635313 0.183568 1.02324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.39343 4.4747 0 0.802731 0.0342216

CAGE analysis