Hb_010288_040

Information

Type -
Description -
Location Contig10288: 41424-43654
Sequence    

Annotation

kegg
ID egr:104426809
description transmembrane protein 205-like
nr
ID XP_010038276.1
description PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059A8W8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03534 PE=4 SV=1
Gene Ontology
ID GO:0005783
description transmembrane protein 205

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010288_040 0.0 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
2 Hb_004732_010 0.212558947 - - -
3 Hb_005779_050 0.2455146909 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
4 Hb_007105_010 0.2590979293 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
5 Hb_002180_010 0.262535797 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000454_060 0.2642875025 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
7 Hb_006907_120 0.2679585524 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
8 Hb_004525_060 0.2721135465 - - -
9 Hb_001894_090 0.282085573 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]
10 Hb_000829_080 0.2856447815 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
11 Hb_003398_030 0.2907316135 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
12 Hb_000077_240 0.292459918 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
13 Hb_009393_170 0.294618523 - - PREDICTED: vestitone reductase-like [Jatropha curcas]
14 Hb_000048_020 0.2952362738 - - -
15 Hb_000186_210 0.2999414482 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
16 Hb_001863_440 0.3005207056 - - Nodulin-26, putative [Ricinus communis]
17 Hb_002316_040 0.3041551934 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_007451_060 0.3064595172 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
19 Hb_003994_170 0.3091362701 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
20 Hb_109268_010 0.3134623706 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]

Gene co-expression network

sample Hb_010288_040 Hb_010288_040 Hb_004732_010 Hb_004732_010 Hb_010288_040--Hb_004732_010 Hb_005779_050 Hb_005779_050 Hb_010288_040--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010288_040--Hb_007105_010 Hb_002180_010 Hb_002180_010 Hb_010288_040--Hb_002180_010 Hb_000454_060 Hb_000454_060 Hb_010288_040--Hb_000454_060 Hb_006907_120 Hb_006907_120 Hb_010288_040--Hb_006907_120 Hb_000829_080 Hb_000829_080 Hb_004732_010--Hb_000829_080 Hb_141383_010 Hb_141383_010 Hb_004732_010--Hb_141383_010 Hb_007451_060 Hb_007451_060 Hb_004732_010--Hb_007451_060 Hb_000189_360 Hb_000189_360 Hb_004732_010--Hb_000189_360 Hb_115784_010 Hb_115784_010 Hb_004732_010--Hb_115784_010 Hb_109268_010 Hb_109268_010 Hb_005779_050--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_005779_050--Hb_001022_060 Hb_005779_050--Hb_007105_010 Hb_005779_050--Hb_006907_120 Hb_128051_010 Hb_128051_010 Hb_005779_050--Hb_128051_010 Hb_007105_010--Hb_006907_120 Hb_001189_060 Hb_001189_060 Hb_007105_010--Hb_001189_060 Hb_000077_240 Hb_000077_240 Hb_007105_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_007105_010--Hb_003398_030 Hb_117240_010 Hb_117240_010 Hb_002180_010--Hb_117240_010 Hb_002180_010--Hb_000829_080 Hb_006922_060 Hb_006922_060 Hb_002180_010--Hb_006922_060 Hb_002180_010--Hb_003398_030 Hb_008289_050 Hb_008289_050 Hb_002180_010--Hb_008289_050 Hb_004525_060 Hb_004525_060 Hb_000454_060--Hb_004525_060 Hb_132998_020 Hb_132998_020 Hb_000454_060--Hb_132998_020 Hb_021888_050 Hb_021888_050 Hb_000454_060--Hb_021888_050 Hb_001504_120 Hb_001504_120 Hb_000454_060--Hb_001504_120 Hb_009780_080 Hb_009780_080 Hb_000454_060--Hb_009780_080 Hb_000317_400 Hb_000317_400 Hb_000454_060--Hb_000317_400 Hb_006907_120--Hb_000077_240 Hb_006907_120--Hb_003398_030 Hb_006907_120--Hb_001189_060 Hb_000186_210 Hb_000186_210 Hb_006907_120--Hb_000186_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28023 3.53641 0 0 0.0535181 0.561803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09271 1.75397 0.166668 2.01678 0

CAGE analysis