Hb_005779_050

Information

Type -
Description -
Location Contig5779: 29696-31134
Sequence    

Annotation

kegg
ID tcc:TCM_046994
description Chalcone and stilbene synthase family protein
nr
ID KDP28845.1
description hypothetical protein JCGZ_14616 [Jatropha curcas]
swissprot
ID O23674
description Type III polyketide synthase A OS=Arabidopsis thaliana GN=PKSA PE=1 SV=1
trembl
ID A0A067K992
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14616 PE=3 SV=1
Gene Ontology
ID GO:0016747
description chalcone and stilbene synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_050 0.0 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
2 Hb_109268_010 0.2012988555 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
3 Hb_001022_060 0.2337638193 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
4 Hb_010288_040 0.2455146909 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
5 Hb_007105_010 0.2621533242 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
6 Hb_006907_120 0.2709525812 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
7 Hb_128051_010 0.282487529 - - -
8 Hb_096224_020 0.2828280453 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
9 Hb_000077_240 0.2830772778 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
10 Hb_010490_030 0.2833034232 - - -
11 Hb_003398_030 0.2853170394 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
12 Hb_074197_060 0.2964378881 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
13 Hb_002180_010 0.3098009053 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_007951_130 0.3396253873 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
15 Hb_004907_020 0.3486766219 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
16 Hb_004525_060 0.3488683875 - - -
17 Hb_004732_010 0.3602223679 - - -
18 Hb_000454_060 0.3667372199 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
19 Hb_004195_180 0.3688723817 - - unnamed protein product [Coffea canephora]
20 Hb_026747_020 0.3724367123 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_005779_050 Hb_005779_050 Hb_109268_010 Hb_109268_010 Hb_005779_050--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_005779_050--Hb_001022_060 Hb_010288_040 Hb_010288_040 Hb_005779_050--Hb_010288_040 Hb_007105_010 Hb_007105_010 Hb_005779_050--Hb_007105_010 Hb_006907_120 Hb_006907_120 Hb_005779_050--Hb_006907_120 Hb_128051_010 Hb_128051_010 Hb_005779_050--Hb_128051_010 Hb_109268_010--Hb_001022_060 Hb_109268_010--Hb_128051_010 Hb_096224_020 Hb_096224_020 Hb_109268_010--Hb_096224_020 Hb_000077_240 Hb_000077_240 Hb_109268_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_109268_010--Hb_003398_030 Hb_001022_060--Hb_128051_010 Hb_001022_060--Hb_096224_020 Hb_003209_050 Hb_003209_050 Hb_001022_060--Hb_003209_050 Hb_139138_010 Hb_139138_010 Hb_001022_060--Hb_139138_010 Hb_004732_010 Hb_004732_010 Hb_010288_040--Hb_004732_010 Hb_010288_040--Hb_007105_010 Hb_002180_010 Hb_002180_010 Hb_010288_040--Hb_002180_010 Hb_000454_060 Hb_000454_060 Hb_010288_040--Hb_000454_060 Hb_010288_040--Hb_006907_120 Hb_007105_010--Hb_006907_120 Hb_001189_060 Hb_001189_060 Hb_007105_010--Hb_001189_060 Hb_007105_010--Hb_000077_240 Hb_007105_010--Hb_003398_030 Hb_006907_120--Hb_000077_240 Hb_006907_120--Hb_003398_030 Hb_006907_120--Hb_001189_060 Hb_000186_210 Hb_000186_210 Hb_006907_120--Hb_000186_210 Hb_128051_010--Hb_003209_050 Hb_128051_010--Hb_000077_240 Hb_128051_010--Hb_139138_010 Hb_128051_010--Hb_003398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.051643 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125079 0.0327957 0 0.0394298 0

CAGE analysis