Hb_096224_020

Information

Type -
Description -
Location Contig96224: 7108-9899
Sequence    

Annotation

kegg
ID rcu:RCOM_0205670
description nucleolysin tia-1, putative
nr
ID KDP33409.1
description hypothetical protein JCGZ_06980 [Jatropha curcas]
swissprot
ID Q9LJH8
description Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1
trembl
ID A0A067KNM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096224_020 0.0 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
2 Hb_002282_040 0.2083127782 - - hypothetical protein VITISV_030841 [Vitis vinifera]
3 Hb_109268_010 0.2497502681 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
4 Hb_128051_010 0.2654773532 - - -
5 Hb_004525_060 0.2735247468 - - -
6 Hb_005779_050 0.2828280453 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
7 Hb_003020_080 0.2837478318 - - -
8 Hb_003209_050 0.2871629913 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
9 Hb_001022_060 0.289560749 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
10 Hb_000317_530 0.2904399251 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_000062_410 0.2966193712 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
12 Hb_000693_020 0.3028301808 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
13 Hb_000454_060 0.3119748464 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
14 Hb_000031_040 0.3380548153 - - centromere protein O [Medicago truncatula]
15 Hb_004907_020 0.3427614939 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
16 Hb_004195_180 0.3537668796 - - unnamed protein product [Coffea canephora]
17 Hb_010288_040 0.3586333116 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
18 Hb_011457_020 0.3589369508 - - PREDICTED: uncharacterized protein LOC105649960 [Jatropha curcas]
19 Hb_002180_010 0.3640778029 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_010422_080 0.3651595935 - - -

Gene co-expression network

sample Hb_096224_020 Hb_096224_020 Hb_002282_040 Hb_002282_040 Hb_096224_020--Hb_002282_040 Hb_109268_010 Hb_109268_010 Hb_096224_020--Hb_109268_010 Hb_128051_010 Hb_128051_010 Hb_096224_020--Hb_128051_010 Hb_004525_060 Hb_004525_060 Hb_096224_020--Hb_004525_060 Hb_005779_050 Hb_005779_050 Hb_096224_020--Hb_005779_050 Hb_003020_080 Hb_003020_080 Hb_096224_020--Hb_003020_080 Hb_000693_020 Hb_000693_020 Hb_002282_040--Hb_000693_020 Hb_003209_050 Hb_003209_050 Hb_002282_040--Hb_003209_050 Hb_002282_040--Hb_003020_080 Hb_002282_040--Hb_128051_010 Hb_003322_010 Hb_003322_010 Hb_002282_040--Hb_003322_010 Hb_001022_060 Hb_001022_060 Hb_109268_010--Hb_001022_060 Hb_109268_010--Hb_128051_010 Hb_109268_010--Hb_005779_050 Hb_000077_240 Hb_000077_240 Hb_109268_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_109268_010--Hb_003398_030 Hb_128051_010--Hb_001022_060 Hb_128051_010--Hb_003209_050 Hb_128051_010--Hb_000077_240 Hb_139138_010 Hb_139138_010 Hb_128051_010--Hb_139138_010 Hb_128051_010--Hb_003398_030 Hb_000454_060 Hb_000454_060 Hb_004525_060--Hb_000454_060 Hb_009780_080 Hb_009780_080 Hb_004525_060--Hb_009780_080 Hb_000048_020 Hb_000048_020 Hb_004525_060--Hb_000048_020 Hb_010288_040 Hb_010288_040 Hb_004525_060--Hb_010288_040 Hb_132998_020 Hb_132998_020 Hb_004525_060--Hb_132998_020 Hb_005779_050--Hb_001022_060 Hb_005779_050--Hb_010288_040 Hb_007105_010 Hb_007105_010 Hb_005779_050--Hb_007105_010 Hb_006907_120 Hb_006907_120 Hb_005779_050--Hb_006907_120 Hb_005779_050--Hb_128051_010 Hb_003020_080--Hb_003322_010 Hb_004931_010 Hb_004931_010 Hb_003020_080--Hb_004931_010 Hb_004931_080 Hb_004931_080 Hb_003020_080--Hb_004931_080 Hb_011457_020 Hb_011457_020 Hb_003020_080--Hb_011457_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.115255 0.103344 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.313673 0.123194 0 0.206891 0

CAGE analysis