Hb_000693_020

Information

Type -
Description -
Location Contig693: 28170-36431
Sequence    

Annotation

kegg
ID cic:CICLE_v10026439mg
description hypothetical protein
nr
ID XP_012073131.1
description PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
swissprot
ID Q9M8L3
description VQ motif-containing protein 11 OS=Arabidopsis thaliana GN=VQ11 PE=1 SV=1
trembl
ID A0A067KXP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06106 PE=4 SV=1
Gene Ontology
ID GO:0005623
description vq motif-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54501: 36448-36777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000693_020 0.0 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
2 Hb_002282_040 0.2084990997 - - hypothetical protein VITISV_030841 [Vitis vinifera]
3 Hb_006816_400 0.2242500717 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
4 Hb_004116_130 0.2360823436 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
5 Hb_000454_060 0.2589370005 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
6 Hb_128051_010 0.289149113 - - -
7 Hb_013399_010 0.2947367311 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
8 Hb_003994_170 0.2980405156 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
9 Hb_003209_050 0.2995588513 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
10 Hb_096224_020 0.3028301808 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
11 Hb_004102_030 0.3064150733 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
12 Hb_000208_030 0.308875565 - - -
13 Hb_139138_010 0.3104914004 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
14 Hb_000152_100 0.3116014473 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
15 Hb_001065_070 0.3116874667 - - -
16 Hb_004525_060 0.3137924339 - - -
17 Hb_000275_130 0.3157527637 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
18 Hb_109268_010 0.3184926688 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
19 Hb_003687_030 0.3224740808 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_092449_010 0.3224964258 - - -

Gene co-expression network

sample Hb_000693_020 Hb_000693_020 Hb_002282_040 Hb_002282_040 Hb_000693_020--Hb_002282_040 Hb_006816_400 Hb_006816_400 Hb_000693_020--Hb_006816_400 Hb_004116_130 Hb_004116_130 Hb_000693_020--Hb_004116_130 Hb_000454_060 Hb_000454_060 Hb_000693_020--Hb_000454_060 Hb_128051_010 Hb_128051_010 Hb_000693_020--Hb_128051_010 Hb_013399_010 Hb_013399_010 Hb_000693_020--Hb_013399_010 Hb_096224_020 Hb_096224_020 Hb_002282_040--Hb_096224_020 Hb_003209_050 Hb_003209_050 Hb_002282_040--Hb_003209_050 Hb_003020_080 Hb_003020_080 Hb_002282_040--Hb_003020_080 Hb_002282_040--Hb_128051_010 Hb_003322_010 Hb_003322_010 Hb_002282_040--Hb_003322_010 Hb_001022_040 Hb_001022_040 Hb_006816_400--Hb_001022_040 Hb_006816_400--Hb_004116_130 Hb_007951_130 Hb_007951_130 Hb_006816_400--Hb_007951_130 Hb_004241_010 Hb_004241_010 Hb_006816_400--Hb_004241_010 Hb_139138_010 Hb_139138_010 Hb_006816_400--Hb_139138_010 Hb_003687_030 Hb_003687_030 Hb_004116_130--Hb_003687_030 Hb_005000_250 Hb_005000_250 Hb_004116_130--Hb_005000_250 Hb_000504_110 Hb_000504_110 Hb_004116_130--Hb_000504_110 Hb_004102_030 Hb_004102_030 Hb_004116_130--Hb_004102_030 Hb_004525_060 Hb_004525_060 Hb_000454_060--Hb_004525_060 Hb_132998_020 Hb_132998_020 Hb_000454_060--Hb_132998_020 Hb_021888_050 Hb_021888_050 Hb_000454_060--Hb_021888_050 Hb_001504_120 Hb_001504_120 Hb_000454_060--Hb_001504_120 Hb_009780_080 Hb_009780_080 Hb_000454_060--Hb_009780_080 Hb_000317_400 Hb_000317_400 Hb_000454_060--Hb_000317_400 Hb_109268_010 Hb_109268_010 Hb_128051_010--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_128051_010--Hb_001022_060 Hb_128051_010--Hb_003209_050 Hb_000077_240 Hb_000077_240 Hb_128051_010--Hb_000077_240 Hb_128051_010--Hb_139138_010 Hb_003398_030 Hb_003398_030 Hb_128051_010--Hb_003398_030 Hb_001504_050 Hb_001504_050 Hb_013399_010--Hb_001504_050 Hb_000866_240 Hb_000866_240 Hb_013399_010--Hb_000866_240 Hb_000029_080 Hb_000029_080 Hb_013399_010--Hb_000029_080 Hb_009476_020 Hb_009476_020 Hb_013399_010--Hb_009476_020 Hb_007885_010 Hb_007885_010 Hb_013399_010--Hb_007885_010 Hb_000676_140 Hb_000676_140 Hb_013399_010--Hb_000676_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0472116 0.0636143 0.0235121 0 0.0249067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129599 0.101907 0 0.0412054 0

CAGE analysis