Hb_001022_040

Information

Type -
Description -
Location Contig1022: 75186-80768
Sequence    

Annotation

kegg
ID rcu:RCOM_0293440
description hypothetical protein
nr
ID XP_012073051.1
description PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
swissprot
ID P9WMV9
description Cholesterol oxidase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=choD PE=1 SV=1
trembl
ID B9SWH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0293440 PE=4 SV=1
Gene Ontology
ID GO:0016614
description PREDICTED: uncharacterized protein LOC105634753

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001022_040 0.0 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
2 Hb_006816_400 0.1796359759 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
3 Hb_000025_440 0.2304412085 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
4 Hb_111347_010 0.2468356208 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
5 Hb_004241_010 0.2523007286 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_000414_150 0.2569147115 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_007951_130 0.2652522633 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
8 Hb_021888_120 0.2800626981 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
9 Hb_000111_230 0.2814180922 - - -
10 Hb_000239_110 0.2841812691 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
11 Hb_000418_080 0.2846873234 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
12 Hb_000077_240 0.2875338491 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
13 Hb_003398_030 0.2972508219 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
14 Hb_002157_090 0.3003507635 - - hypothetical protein VITISV_041741 [Vitis vinifera]
15 Hb_003158_020 0.3010504197 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
16 Hb_012379_010 0.3013722669 - - -
17 Hb_117092_010 0.3049900526 - - acyl-CoA oxidase, putative [Ricinus communis]
18 Hb_139138_010 0.3054793877 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
19 Hb_128051_010 0.3074385169 - - -
20 Hb_011609_110 0.3132899661 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_001022_040 Hb_001022_040 Hb_006816_400 Hb_006816_400 Hb_001022_040--Hb_006816_400 Hb_000025_440 Hb_000025_440 Hb_001022_040--Hb_000025_440 Hb_111347_010 Hb_111347_010 Hb_001022_040--Hb_111347_010 Hb_004241_010 Hb_004241_010 Hb_001022_040--Hb_004241_010 Hb_000414_150 Hb_000414_150 Hb_001022_040--Hb_000414_150 Hb_007951_130 Hb_007951_130 Hb_001022_040--Hb_007951_130 Hb_000693_020 Hb_000693_020 Hb_006816_400--Hb_000693_020 Hb_004116_130 Hb_004116_130 Hb_006816_400--Hb_004116_130 Hb_006816_400--Hb_007951_130 Hb_006816_400--Hb_004241_010 Hb_139138_010 Hb_139138_010 Hb_006816_400--Hb_139138_010 Hb_001017_080 Hb_001017_080 Hb_000025_440--Hb_001017_080 Hb_182005_010 Hb_182005_010 Hb_000025_440--Hb_182005_010 Hb_000239_110 Hb_000239_110 Hb_000025_440--Hb_000239_110 Hb_156503_040 Hb_156503_040 Hb_000025_440--Hb_156503_040 Hb_000500_210 Hb_000500_210 Hb_000025_440--Hb_000500_210 Hb_000077_240 Hb_000077_240 Hb_111347_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_111347_010--Hb_003398_030 Hb_003158_020 Hb_003158_020 Hb_111347_010--Hb_003158_020 Hb_128051_010 Hb_128051_010 Hb_111347_010--Hb_128051_010 Hb_000853_130 Hb_000853_130 Hb_111347_010--Hb_000853_130 Hb_012379_010 Hb_012379_010 Hb_004241_010--Hb_012379_010 Hb_002157_090 Hb_002157_090 Hb_004241_010--Hb_002157_090 Hb_000111_230 Hb_000111_230 Hb_004241_010--Hb_000111_230 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140 Hb_001584_030 Hb_001584_030 Hb_004241_010--Hb_001584_030 Hb_004241_010--Hb_000414_150 Hb_002094_040 Hb_002094_040 Hb_000414_150--Hb_002094_040 Hb_006376_010 Hb_006376_010 Hb_000414_150--Hb_006376_010 Hb_001563_020 Hb_001563_020 Hb_000414_150--Hb_001563_020 Hb_000414_150--Hb_000111_230 Hb_005714_050 Hb_005714_050 Hb_000414_150--Hb_005714_050 Hb_007951_130--Hb_139138_010 Hb_021888_120 Hb_021888_120 Hb_007951_130--Hb_021888_120 Hb_000096_130 Hb_000096_130 Hb_007951_130--Hb_000096_130 Hb_011909_140 Hb_011909_140 Hb_007951_130--Hb_011909_140 Hb_000483_480 Hb_000483_480 Hb_007951_130--Hb_000483_480 Hb_000418_080 Hb_000418_080 Hb_007951_130--Hb_000418_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0432258 0.00408923 0.0230005 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0476184 0.112421 0 0.0111362 0

CAGE analysis