Hb_182005_010

Information

Type -
Description -
Location Contig182005: 1275-1865
Sequence    

Annotation

kegg
ID rcu:RCOM_0533190
description hypothetical protein
nr
ID XP_012078531.1
description PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17346 PE=4 SV=1
Gene Ontology
ID GO:0043231
description protein translocase subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182005_010 0.0 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
2 Hb_021924_010 0.1549787717 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
3 Hb_001488_400 0.1762749011 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
4 Hb_000500_210 0.177735894 - - -
5 Hb_000975_180 0.1829464243 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
6 Hb_005245_070 0.1961109842 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
7 Hb_033376_010 0.1967113437 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
8 Hb_004128_040 0.2017774962 - - -
9 Hb_004429_110 0.2052235306 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
10 Hb_023732_060 0.2055806662 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
11 Hb_001832_150 0.2145573318 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
12 Hb_004421_020 0.2201108673 - - -
13 Hb_000025_440 0.2206684515 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
14 Hb_000454_180 0.2218445021 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
15 Hb_004755_030 0.2232027333 - - EG964 [Manihot glaziovii]
16 Hb_000181_380 0.2243258193 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
17 Hb_009659_010 0.2251976416 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
18 Hb_000239_110 0.2259085379 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
19 Hb_001105_090 0.2275029297 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
20 Hb_000275_130 0.2281865939 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]

Gene co-expression network

sample Hb_182005_010 Hb_182005_010 Hb_021924_010 Hb_021924_010 Hb_182005_010--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_182005_010--Hb_001488_400 Hb_000500_210 Hb_000500_210 Hb_182005_010--Hb_000500_210 Hb_000975_180 Hb_000975_180 Hb_182005_010--Hb_000975_180 Hb_005245_070 Hb_005245_070 Hb_182005_010--Hb_005245_070 Hb_033376_010 Hb_033376_010 Hb_182005_010--Hb_033376_010 Hb_021924_010--Hb_000975_180 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_001488_400--Hb_000975_180 Hb_001488_400--Hb_003226_220 Hb_000272_050 Hb_000272_050 Hb_001488_400--Hb_000272_050 Hb_000212_210 Hb_000212_210 Hb_001488_400--Hb_000212_210 Hb_124055_010 Hb_124055_010 Hb_001488_400--Hb_124055_010 Hb_011224_040 Hb_011224_040 Hb_000500_210--Hb_011224_040 Hb_004429_110 Hb_004429_110 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_000500_210--Hb_004755_030 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_000367_030 Hb_000367_030 Hb_005245_070--Hb_000367_030 Hb_005245_070--Hb_000975_180 Hb_003502_100 Hb_003502_100 Hb_005245_070--Hb_003502_100 Hb_005245_070--Hb_021924_010 Hb_005245_070--Hb_004429_110 Hb_004128_040 Hb_004128_040 Hb_005245_070--Hb_004128_040 Hb_033376_010--Hb_000130_100 Hb_033376_010--Hb_000975_180 Hb_000463_130 Hb_000463_130 Hb_033376_010--Hb_000463_130 Hb_000181_380 Hb_000181_380 Hb_033376_010--Hb_000181_380 Hb_001922_180 Hb_001922_180 Hb_033376_010--Hb_001922_180 Hb_033376_010--Hb_021924_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88612 2.17027 1.22923 9.70395 0.148799 2.14277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8161 22.437 0.94862 1.62349 0.521339

CAGE analysis