Hb_001584_030

Information

Type -
Description -
Location Contig1584: 30497-31479
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13100g
description POPTRDRAFT_225402; hypothetical protein
nr
ID XP_010264690.1
description PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID B9HWE8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13100g PE=3 SV=2
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_030 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
2 Hb_002157_090 0.1389731366 - - hypothetical protein VITISV_041741 [Vitis vinifera]
3 Hb_000603_010 0.1684877493 - - PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]
4 Hb_001563_020 0.1917698758 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
5 Hb_004241_010 0.225089844 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
6 Hb_133661_010 0.2383245776 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
7 Hb_001355_120 0.2394834301 - - cytochrome P450, putative [Ricinus communis]
8 Hb_015586_010 0.2420894938 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
9 Hb_118094_010 0.2454857441 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
10 Hb_002874_020 0.2456356715 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
11 Hb_004158_100 0.2697000712 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
12 Hb_004200_030 0.2729219659 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
13 Hb_002081_170 0.2763525529 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
14 Hb_012379_010 0.2807981775 - - -
15 Hb_012008_010 0.2869684369 - - -
16 Hb_001828_100 0.2870342185 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
17 Hb_005045_050 0.2893646178 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
18 Hb_001269_250 0.30508472 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
19 Hb_005363_010 0.3080171821 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
20 Hb_029243_010 0.3180712711 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_030 Hb_001584_030 Hb_002157_090 Hb_002157_090 Hb_001584_030--Hb_002157_090 Hb_000603_010 Hb_000603_010 Hb_001584_030--Hb_000603_010 Hb_001563_020 Hb_001563_020 Hb_001584_030--Hb_001563_020 Hb_004241_010 Hb_004241_010 Hb_001584_030--Hb_004241_010 Hb_133661_010 Hb_133661_010 Hb_001584_030--Hb_133661_010 Hb_001355_120 Hb_001355_120 Hb_001584_030--Hb_001355_120 Hb_002157_090--Hb_001563_020 Hb_002157_090--Hb_004241_010 Hb_015586_010 Hb_015586_010 Hb_002157_090--Hb_015586_010 Hb_012379_010 Hb_012379_010 Hb_002157_090--Hb_012379_010 Hb_012008_010 Hb_012008_010 Hb_002157_090--Hb_012008_010 Hb_000603_010--Hb_001355_120 Hb_004158_100 Hb_004158_100 Hb_000603_010--Hb_004158_100 Hb_002874_020 Hb_002874_020 Hb_000603_010--Hb_002874_020 Hb_000603_010--Hb_001563_020 Hb_000603_010--Hb_133661_010 Hb_002081_170 Hb_002081_170 Hb_001563_020--Hb_002081_170 Hb_000414_150 Hb_000414_150 Hb_001563_020--Hb_000414_150 Hb_001563_020--Hb_004241_010 Hb_004241_010--Hb_012379_010 Hb_000111_230 Hb_000111_230 Hb_004241_010--Hb_000111_230 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140 Hb_004241_010--Hb_000414_150 Hb_133661_010--Hb_001355_120 Hb_118094_010 Hb_118094_010 Hb_133661_010--Hb_118094_010 Hb_133661_010--Hb_002157_090 Hb_000261_170 Hb_000261_170 Hb_133661_010--Hb_000261_170 Hb_001355_120--Hb_004158_100 Hb_001355_120--Hb_000261_170 Hb_000649_340 Hb_000649_340 Hb_001355_120--Hb_000649_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0255948 0.0202141 0.0867037 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0583839 0.0459134 0 0 0

CAGE analysis