Hb_002874_020

Information

Type transcription factor
Description TF Family: PHD
Location Contig2874: 13361-16016
Sequence    

Annotation

kegg
ID pop:POPTR_0006s29220g
description hypothetical protein
nr
ID XP_012076313.1
description PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
swissprot
ID Q9P1Y6
description PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3
trembl
ID A0A067KB29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07002 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29975: 12135-13580 , PASA_asmbl_29976: 15086-15524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_020 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
2 Hb_000603_010 0.2198333899 - - PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]
3 Hb_001584_030 0.2456356715 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
4 Hb_001355_120 0.2618299876 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000109_230 0.2619306243 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001514_260 0.2664535867 - - -
7 Hb_001431_100 0.2676728739 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
8 Hb_004200_030 0.2794336559 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
9 Hb_003602_010 0.2838620464 - - serine hydroxymethyltransferase, partial [Populus alba]
10 Hb_101319_020 0.2841320814 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_001541_220 0.2985951502 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
12 Hb_001597_050 0.3000761851 - - -
13 Hb_146902_010 0.3013350654 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001269_250 0.3028918414 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
15 Hb_003813_010 0.3035858896 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
16 Hb_008971_030 0.3080170185 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003120_100 0.3082684417 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
18 Hb_007210_020 0.3152485728 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
19 Hb_000261_170 0.3190833518 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_004785_050 0.3201743645 - - PREDICTED: serine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_002874_020 Hb_002874_020 Hb_000603_010 Hb_000603_010 Hb_002874_020--Hb_000603_010 Hb_001584_030 Hb_001584_030 Hb_002874_020--Hb_001584_030 Hb_001355_120 Hb_001355_120 Hb_002874_020--Hb_001355_120 Hb_000109_230 Hb_000109_230 Hb_002874_020--Hb_000109_230 Hb_001514_260 Hb_001514_260 Hb_002874_020--Hb_001514_260 Hb_001431_100 Hb_001431_100 Hb_002874_020--Hb_001431_100 Hb_000603_010--Hb_001584_030 Hb_000603_010--Hb_001355_120 Hb_004158_100 Hb_004158_100 Hb_000603_010--Hb_004158_100 Hb_001563_020 Hb_001563_020 Hb_000603_010--Hb_001563_020 Hb_133661_010 Hb_133661_010 Hb_000603_010--Hb_133661_010 Hb_002157_090 Hb_002157_090 Hb_001584_030--Hb_002157_090 Hb_001584_030--Hb_001563_020 Hb_004241_010 Hb_004241_010 Hb_001584_030--Hb_004241_010 Hb_001584_030--Hb_133661_010 Hb_001584_030--Hb_001355_120 Hb_001355_120--Hb_004158_100 Hb_000261_170 Hb_000261_170 Hb_001355_120--Hb_000261_170 Hb_000649_340 Hb_000649_340 Hb_001355_120--Hb_000649_340 Hb_001355_120--Hb_133661_010 Hb_001597_050 Hb_001597_050 Hb_000109_230--Hb_001597_050 Hb_007210_020 Hb_007210_020 Hb_000109_230--Hb_007210_020 Hb_000032_050 Hb_000032_050 Hb_000109_230--Hb_000032_050 Hb_000157_050 Hb_000157_050 Hb_000109_230--Hb_000157_050 Hb_001828_100 Hb_001828_100 Hb_000109_230--Hb_001828_100 Hb_178968_040 Hb_178968_040 Hb_000109_230--Hb_178968_040 Hb_004308_010 Hb_004308_010 Hb_001514_260--Hb_004308_010 Hb_029508_020 Hb_029508_020 Hb_001514_260--Hb_029508_020 Hb_003333_070 Hb_003333_070 Hb_001514_260--Hb_003333_070 Hb_000541_030 Hb_000541_030 Hb_001514_260--Hb_000541_030 Hb_002309_030 Hb_002309_030 Hb_001514_260--Hb_002309_030 Hb_119808_020 Hb_119808_020 Hb_001514_260--Hb_119808_020 Hb_007100_010 Hb_007100_010 Hb_001431_100--Hb_007100_010 Hb_004308_020 Hb_004308_020 Hb_001431_100--Hb_004308_020 Hb_006469_110 Hb_006469_110 Hb_001431_100--Hb_006469_110 Hb_008971_030 Hb_008971_030 Hb_001431_100--Hb_008971_030 Hb_001976_070 Hb_001976_070 Hb_001431_100--Hb_001976_070 Hb_064194_010 Hb_064194_010 Hb_001431_100--Hb_064194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0212621 0.307107 0.779156 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242797 0.267351 0 0 0

CAGE analysis