Hb_012008_010

Information

Type -
Description -
Location Contig12008: 1224-2132
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012008_010 0.0 - - -
2 Hb_029243_010 0.1433934261 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
3 Hb_001771_080 0.2214051657 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
4 Hb_002157_090 0.2521682815 - - hypothetical protein VITISV_041741 [Vitis vinifera]
5 Hb_004102_030 0.2572385061 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
6 Hb_007558_020 0.2621107067 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
7 Hb_000418_080 0.2621755023 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
8 Hb_009233_030 0.2689580151 - - protein binding protein, putative [Ricinus communis]
9 Hb_002272_010 0.2740430162 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012379_010 0.2764799077 - - -
11 Hb_015586_010 0.2774419815 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
12 Hb_006907_080 0.2832762843 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
13 Hb_001584_030 0.2869684369 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
14 Hb_098533_020 0.2892737479 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
15 Hb_006907_100 0.2894673365 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
16 Hb_004241_010 0.2903248579 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
17 Hb_003687_030 0.2959364182 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_104764_010 0.2980854657 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
19 Hb_118094_010 0.2982916995 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
20 Hb_002341_020 0.2992059892 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]

Gene co-expression network

sample Hb_012008_010 Hb_012008_010 Hb_029243_010 Hb_029243_010 Hb_012008_010--Hb_029243_010 Hb_001771_080 Hb_001771_080 Hb_012008_010--Hb_001771_080 Hb_002157_090 Hb_002157_090 Hb_012008_010--Hb_002157_090 Hb_004102_030 Hb_004102_030 Hb_012008_010--Hb_004102_030 Hb_007558_020 Hb_007558_020 Hb_012008_010--Hb_007558_020 Hb_000418_080 Hb_000418_080 Hb_012008_010--Hb_000418_080 Hb_029243_010--Hb_000418_080 Hb_009233_030 Hb_009233_030 Hb_029243_010--Hb_009233_030 Hb_001507_030 Hb_001507_030 Hb_029243_010--Hb_001507_030 Hb_029243_010--Hb_001771_080 Hb_002272_010 Hb_002272_010 Hb_029243_010--Hb_002272_010 Hb_104764_010 Hb_104764_010 Hb_001771_080--Hb_104764_010 Hb_001771_080--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_001771_080--Hb_098533_020 Hb_006907_100 Hb_006907_100 Hb_001771_080--Hb_006907_100 Hb_062038_010 Hb_062038_010 Hb_001771_080--Hb_062038_010 Hb_000394_110 Hb_000394_110 Hb_001771_080--Hb_000394_110 Hb_001584_030 Hb_001584_030 Hb_002157_090--Hb_001584_030 Hb_001563_020 Hb_001563_020 Hb_002157_090--Hb_001563_020 Hb_004241_010 Hb_004241_010 Hb_002157_090--Hb_004241_010 Hb_015586_010 Hb_015586_010 Hb_002157_090--Hb_015586_010 Hb_012379_010 Hb_012379_010 Hb_002157_090--Hb_012379_010 Hb_009976_010 Hb_009976_010 Hb_004102_030--Hb_009976_010 Hb_000612_040 Hb_000612_040 Hb_004102_030--Hb_000612_040 Hb_084889_010 Hb_084889_010 Hb_004102_030--Hb_084889_010 Hb_032974_010 Hb_032974_010 Hb_004102_030--Hb_032974_010 Hb_000275_130 Hb_000275_130 Hb_004102_030--Hb_000275_130 Hb_148891_010 Hb_148891_010 Hb_004102_030--Hb_148891_010 Hb_007558_020--Hb_000394_110 Hb_000343_180 Hb_000343_180 Hb_007558_020--Hb_000343_180 Hb_002849_140 Hb_002849_140 Hb_007558_020--Hb_002849_140 Hb_006907_080 Hb_006907_080 Hb_007558_020--Hb_006907_080 Hb_140049_010 Hb_140049_010 Hb_007558_020--Hb_140049_010 Hb_000891_030 Hb_000891_030 Hb_000418_080--Hb_000891_030 Hb_000418_080--Hb_140049_010 Hb_000418_080--Hb_006907_080 Hb_000418_080--Hb_001507_030 Hb_003687_030 Hb_003687_030 Hb_000418_080--Hb_003687_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.374164 1.68771 0.829842 1.49274 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87147 1.76898 0.419256 0 0

CAGE analysis