Hb_001771_080

Information

Type -
Description -
Location Contig1771: 90773-93055
Sequence    

Annotation

kegg
ID atr:s00040p00234580
description AMTR_s00040p00234580; hypothetical protein
nr
ID XP_006851788.1
description PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
swissprot
ID Q9SGE0
description UDP-D-apiose/UDP-D-xylose synthase 2 OS=Arabidopsis thaliana GN=AXS2 PE=2 SV=1
trembl
ID W1Q048
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00040p00234580 PE=4 SV=1
Gene Ontology
ID GO:0005737
description udp-d-apiose udp-d-xylose synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16999: 90943-91302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001771_080 0.0 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
2 Hb_104764_010 0.1525698401 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
3 Hb_007558_020 0.1866420644 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
4 Hb_098533_020 0.1995029834 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
5 Hb_006907_100 0.2062767378 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
6 Hb_062038_010 0.208384575 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
7 Hb_000394_110 0.2150901192 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_000529_150 0.216013931 - - protein with unknown function [Ricinus communis]
9 Hb_012008_010 0.2214051657 - - -
10 Hb_031822_010 0.2228298057 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
11 Hb_000510_230 0.2268845589 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
12 Hb_003687_030 0.2295769479 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_005663_070 0.2297443531 - - dehydrin protein [Manihot esculenta]
14 Hb_171900_020 0.2325824655 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
15 Hb_089140_110 0.233544691 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_002849_140 0.2342306204 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
17 Hb_006907_080 0.2344331493 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
18 Hb_008768_020 0.2352429733 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
19 Hb_003147_070 0.2386618345 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
20 Hb_000189_540 0.2402006029 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001771_080 Hb_001771_080 Hb_104764_010 Hb_104764_010 Hb_001771_080--Hb_104764_010 Hb_007558_020 Hb_007558_020 Hb_001771_080--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_001771_080--Hb_098533_020 Hb_006907_100 Hb_006907_100 Hb_001771_080--Hb_006907_100 Hb_062038_010 Hb_062038_010 Hb_001771_080--Hb_062038_010 Hb_000394_110 Hb_000394_110 Hb_001771_080--Hb_000394_110 Hb_173030_010 Hb_173030_010 Hb_104764_010--Hb_173030_010 Hb_002341_020 Hb_002341_020 Hb_104764_010--Hb_002341_020 Hb_104764_010--Hb_007558_020 Hb_006907_080 Hb_006907_080 Hb_104764_010--Hb_006907_080 Hb_000886_030 Hb_000886_030 Hb_104764_010--Hb_000886_030 Hb_007558_020--Hb_000394_110 Hb_000343_180 Hb_000343_180 Hb_007558_020--Hb_000343_180 Hb_002849_140 Hb_002849_140 Hb_007558_020--Hb_002849_140 Hb_007558_020--Hb_006907_080 Hb_140049_010 Hb_140049_010 Hb_007558_020--Hb_140049_010 Hb_000031_080 Hb_000031_080 Hb_098533_020--Hb_000031_080 Hb_000189_540 Hb_000189_540 Hb_098533_020--Hb_000189_540 Hb_000465_510 Hb_000465_510 Hb_098533_020--Hb_000465_510 Hb_000152_100 Hb_000152_100 Hb_098533_020--Hb_000152_100 Hb_000340_500 Hb_000340_500 Hb_098533_020--Hb_000340_500 Hb_005015_030 Hb_005015_030 Hb_098533_020--Hb_005015_030 Hb_000302_130 Hb_000302_130 Hb_006907_100--Hb_000302_130 Hb_000743_030 Hb_000743_030 Hb_006907_100--Hb_000743_030 Hb_005000_250 Hb_005000_250 Hb_006907_100--Hb_005000_250 Hb_000122_050 Hb_000122_050 Hb_006907_100--Hb_000122_050 Hb_155541_010 Hb_155541_010 Hb_006907_100--Hb_155541_010 Hb_005928_050 Hb_005928_050 Hb_006907_100--Hb_005928_050 Hb_007553_020 Hb_007553_020 Hb_062038_010--Hb_007553_020 Hb_001234_070 Hb_001234_070 Hb_062038_010--Hb_001234_070 Hb_003582_070 Hb_003582_070 Hb_062038_010--Hb_003582_070 Hb_002686_180 Hb_002686_180 Hb_062038_010--Hb_002686_180 Hb_000356_090 Hb_000356_090 Hb_062038_010--Hb_000356_090 Hb_001511_260 Hb_001511_260 Hb_062038_010--Hb_001511_260 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_000394_110--Hb_098533_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0342105 0.267309 0.273003 0.297771 0.0160249 0.0178079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195259 0.368634 0.114477 0.049195 0

CAGE analysis