Hb_173030_010

Information

Type -
Description -
Location Contig173030: 1640-2398
Sequence    

Annotation

kegg
ID rcu:RCOM_1321060
description hypothetical protein
nr
ID XP_002525683.1
description hypothetical protein RCOM_1321060 [Ricinus communis]
swissprot
ID F4K2F0
description Protein EMSY-LIKE 3 OS=Arabidopsis thaliana GN=EML3 PE=1 SV=1
trembl
ID B9SI64
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1321060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16488: 1703-2289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173030_010 0.0 - - hypothetical protein RCOM_1321060 [Ricinus communis]
2 Hb_104764_010 0.2070024713 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
3 Hb_000057_080 0.2284569245 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
4 Hb_005363_010 0.2288685782 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
5 Hb_030944_010 0.2318097163 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
6 Hb_003442_100 0.2321582898 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
7 Hb_006907_080 0.2398545884 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
8 Hb_001189_110 0.2405112009 - - NAC transcription factor 066 [Jatropha curcas]
9 Hb_001675_030 0.245799222 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004899_310 0.2472711187 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012807_130 0.2534096582 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
12 Hb_172632_050 0.2539412519 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
13 Hb_001999_240 0.2607662009 - - PREDICTED: josephin-like protein [Populus euphratica]
14 Hb_002249_070 0.2608353293 - - gcn4-complementing protein, putative [Ricinus communis]
15 Hb_000856_050 0.2617144886 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
16 Hb_000450_160 0.2623107862 - - hypothetical protein JCGZ_16746 [Jatropha curcas]
17 Hb_006922_090 0.2630850283 - - PREDICTED: interaptin [Jatropha curcas]
18 Hb_000776_060 0.2638622118 - - histone H4 [Zea mays]
19 Hb_002035_110 0.2638986291 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
20 Hb_005663_070 0.2642813001 - - dehydrin protein [Manihot esculenta]

Gene co-expression network

sample Hb_173030_010 Hb_173030_010 Hb_104764_010 Hb_104764_010 Hb_173030_010--Hb_104764_010 Hb_000057_080 Hb_000057_080 Hb_173030_010--Hb_000057_080 Hb_005363_010 Hb_005363_010 Hb_173030_010--Hb_005363_010 Hb_030944_010 Hb_030944_010 Hb_173030_010--Hb_030944_010 Hb_003442_100 Hb_003442_100 Hb_173030_010--Hb_003442_100 Hb_006907_080 Hb_006907_080 Hb_173030_010--Hb_006907_080 Hb_001771_080 Hb_001771_080 Hb_104764_010--Hb_001771_080 Hb_002341_020 Hb_002341_020 Hb_104764_010--Hb_002341_020 Hb_007558_020 Hb_007558_020 Hb_104764_010--Hb_007558_020 Hb_104764_010--Hb_006907_080 Hb_000886_030 Hb_000886_030 Hb_104764_010--Hb_000886_030 Hb_006922_090 Hb_006922_090 Hb_000057_080--Hb_006922_090 Hb_000057_080--Hb_030944_010 Hb_001287_060 Hb_001287_060 Hb_000057_080--Hb_001287_060 Hb_000139_140 Hb_000139_140 Hb_000057_080--Hb_000139_140 Hb_001366_060 Hb_001366_060 Hb_000057_080--Hb_001366_060 Hb_001022_050 Hb_001022_050 Hb_000057_080--Hb_001022_050 Hb_001221_520 Hb_001221_520 Hb_005363_010--Hb_001221_520 Hb_118094_010 Hb_118094_010 Hb_005363_010--Hb_118094_010 Hb_001507_030 Hb_001507_030 Hb_005363_010--Hb_001507_030 Hb_001999_240 Hb_001999_240 Hb_005363_010--Hb_001999_240 Hb_003020_180 Hb_003020_180 Hb_005363_010--Hb_003020_180 Hb_004899_310 Hb_004899_310 Hb_005363_010--Hb_004899_310 Hb_004195_090 Hb_004195_090 Hb_030944_010--Hb_004195_090 Hb_000059_300 Hb_000059_300 Hb_030944_010--Hb_000059_300 Hb_000832_280 Hb_000832_280 Hb_030944_010--Hb_000832_280 Hb_001341_200 Hb_001341_200 Hb_030944_010--Hb_001341_200 Hb_000856_050 Hb_000856_050 Hb_030944_010--Hb_000856_050 Hb_001189_110 Hb_001189_110 Hb_003442_100--Hb_001189_110 Hb_006446_010 Hb_006446_010 Hb_003442_100--Hb_006446_010 Hb_003442_100--Hb_004899_310 Hb_001103_020 Hb_001103_020 Hb_003442_100--Hb_001103_020 Hb_005779_030 Hb_005779_030 Hb_003442_100--Hb_005779_030 Hb_012317_020 Hb_012317_020 Hb_003442_100--Hb_012317_020 Hb_140049_010 Hb_140049_010 Hb_006907_080--Hb_140049_010 Hb_000120_150 Hb_000120_150 Hb_006907_080--Hb_000120_150 Hb_006907_080--Hb_007558_020 Hb_000418_080 Hb_000418_080 Hb_006907_080--Hb_000418_080 Hb_002035_110 Hb_002035_110 Hb_006907_080--Hb_002035_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.730162 0.373896 1.25488 0 0.115255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.558871 0.439035 0.369993 0.457358 0

CAGE analysis