Hb_127194_010

Information

Type rubber biosynthesis
Description Gene Name: Mevalonate kinase
Location Contig127194: 741-2993
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006979mg
description hypothetical protein
nr
ID AFJ74336.1
description mevalonate kinase [Hevea brasiliensis]
swissprot
ID P46086
description Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1
trembl
ID A0A067JVG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23362 PE=3 SV=1
Gene Ontology
ID GO:0005737
description mevalonate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08319: 774-1627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127194_010 0.0 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
2 Hb_000394_110 0.1602546945 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_000321_160 0.1605613571 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
4 Hb_000805_110 0.1606297031 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
5 Hb_004324_300 0.1639994001 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
6 Hb_000475_040 0.1663858944 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_002028_140 0.1670392637 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
8 Hb_011457_150 0.1732208453 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
9 Hb_000210_010 0.1771287425 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
10 Hb_000193_110 0.1784069857 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
11 Hb_011618_060 0.1784717654 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
12 Hb_005211_180 0.1804442759 - - Transmembrane protein TPARL, putative [Ricinus communis]
13 Hb_001449_010 0.1804615849 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000045_300 0.1823393715 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
15 Hb_012565_070 0.1837321025 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_002027_350 0.1842464266 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
17 Hb_001123_200 0.1844838454 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000164_100 0.1857100105 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
19 Hb_001234_070 0.1858123742 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
20 Hb_168978_020 0.1882530246 - - hypothetical protein POPTR_0002s10960g [Populus trichocarpa]

Gene co-expression network

sample Hb_127194_010 Hb_127194_010 Hb_000394_110 Hb_000394_110 Hb_127194_010--Hb_000394_110 Hb_000321_160 Hb_000321_160 Hb_127194_010--Hb_000321_160 Hb_000805_110 Hb_000805_110 Hb_127194_010--Hb_000805_110 Hb_004324_300 Hb_004324_300 Hb_127194_010--Hb_004324_300 Hb_000475_040 Hb_000475_040 Hb_127194_010--Hb_000475_040 Hb_002028_140 Hb_002028_140 Hb_127194_010--Hb_002028_140 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_006153_110 Hb_006153_110 Hb_000321_160--Hb_006153_110 Hb_000236_390 Hb_000236_390 Hb_000321_160--Hb_000236_390 Hb_000193_110 Hb_000193_110 Hb_000321_160--Hb_000193_110 Hb_000529_030 Hb_000529_030 Hb_000321_160--Hb_000529_030 Hb_010106_010 Hb_010106_010 Hb_000321_160--Hb_010106_010 Hb_011512_070 Hb_011512_070 Hb_000321_160--Hb_011512_070 Hb_000211_030 Hb_000211_030 Hb_000805_110--Hb_000211_030 Hb_000309_130 Hb_000309_130 Hb_000805_110--Hb_000309_130 Hb_002217_020 Hb_002217_020 Hb_000805_110--Hb_002217_020 Hb_000367_160 Hb_000367_160 Hb_000805_110--Hb_000367_160 Hb_000086_140 Hb_000086_140 Hb_000805_110--Hb_000086_140 Hb_009904_010 Hb_009904_010 Hb_000805_110--Hb_009904_010 Hb_000856_380 Hb_000856_380 Hb_004324_300--Hb_000856_380 Hb_003020_270 Hb_003020_270 Hb_004324_300--Hb_003020_270 Hb_007943_050 Hb_007943_050 Hb_004324_300--Hb_007943_050 Hb_002234_100 Hb_002234_100 Hb_004324_300--Hb_002234_100 Hb_000210_010 Hb_000210_010 Hb_004324_300--Hb_000210_010 Hb_000010_240 Hb_000010_240 Hb_004324_300--Hb_000010_240 Hb_000086_340 Hb_000086_340 Hb_000475_040--Hb_000086_340 Hb_149714_010 Hb_149714_010 Hb_000475_040--Hb_149714_010 Hb_000302_260 Hb_000302_260 Hb_000475_040--Hb_000302_260 Hb_001123_200 Hb_001123_200 Hb_000475_040--Hb_001123_200 Hb_000475_040--Hb_000210_010 Hb_002542_040 Hb_002542_040 Hb_002028_140--Hb_002542_040 Hb_001953_070 Hb_001953_070 Hb_002028_140--Hb_001953_070 Hb_002016_150 Hb_002016_150 Hb_002028_140--Hb_002016_150 Hb_001998_120 Hb_001998_120 Hb_002028_140--Hb_001998_120 Hb_000010_110 Hb_000010_110 Hb_002028_140--Hb_000010_110 Hb_002028_140--Hb_000367_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3339 16.574 21.879 6.45813 2.50941 2.48913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0114 21.2836 7.52265 3.89966 4.18382

CAGE analysis