Hb_001959_010

Information

Type -
Description -
Location Contig1959: 4428-22382
Sequence    

Annotation

kegg
ID rcu:RCOM_1023940
description myosin XI, putative
nr
ID XP_002518192.1
description myosin XI, putative [Ricinus communis]
swissprot
ID F4I460
description Myosin-8 OS=Arabidopsis thaliana GN=XI-B PE=3 SV=1
trembl
ID B9RWS3
description Myosin XI, putative OS=Ricinus communis GN=RCOM_1023940 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19607: 8317-11064 , PASA_asmbl_19609: 11351-11973 , PASA_asmbl_19610: 13230-13455 , PASA_asmbl_19612: 14540-15368 , PASA_asmbl_19613: 19233-20788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_010 0.0 - - myosin XI, putative [Ricinus communis]
2 Hb_002671_090 0.1460834697 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
3 Hb_001114_080 0.1622660228 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
4 Hb_000025_370 0.1686641747 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
5 Hb_000394_110 0.1724240679 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_009111_020 0.1777267332 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
7 Hb_000300_700 0.1825958313 - - PREDICTED: adenylyl-sulfate kinase 3 [Jatropha curcas]
8 Hb_189216_030 0.1838327277 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
9 Hb_118282_010 0.1851188177 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
10 Hb_000796_010 0.1910711391 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
11 Hb_000200_200 0.1946099941 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
12 Hb_000057_140 0.1987791209 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
13 Hb_005181_160 0.1990122219 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
14 Hb_000805_110 0.2063037631 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
15 Hb_001221_330 0.2065083158 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
16 Hb_000122_190 0.2072718686 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
17 Hb_011053_010 0.2076986425 - - PREDICTED: uncharacterized protein LOC105631146 [Jatropha curcas]
18 Hb_002260_010 0.2090197961 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
19 Hb_002043_050 0.2092083672 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
20 Hb_024074_010 0.2096965855 - - PREDICTED: cytochrome c [Jatropha curcas]

Gene co-expression network

sample Hb_001959_010 Hb_001959_010 Hb_002671_090 Hb_002671_090 Hb_001959_010--Hb_002671_090 Hb_001114_080 Hb_001114_080 Hb_001959_010--Hb_001114_080 Hb_000025_370 Hb_000025_370 Hb_001959_010--Hb_000025_370 Hb_000394_110 Hb_000394_110 Hb_001959_010--Hb_000394_110 Hb_009111_020 Hb_009111_020 Hb_001959_010--Hb_009111_020 Hb_000300_700 Hb_000300_700 Hb_001959_010--Hb_000300_700 Hb_002671_090--Hb_000025_370 Hb_002028_090 Hb_002028_090 Hb_002671_090--Hb_002028_090 Hb_002671_090--Hb_000300_700 Hb_002260_010 Hb_002260_010 Hb_002671_090--Hb_002260_010 Hb_001188_030 Hb_001188_030 Hb_002671_090--Hb_001188_030 Hb_000796_010 Hb_000796_010 Hb_001114_080--Hb_000796_010 Hb_024074_010 Hb_024074_010 Hb_001114_080--Hb_024074_010 Hb_000742_280 Hb_000742_280 Hb_001114_080--Hb_000742_280 Hb_000331_430 Hb_000331_430 Hb_001114_080--Hb_000331_430 Hb_007894_050 Hb_007894_050 Hb_001114_080--Hb_007894_050 Hb_066720_010 Hb_066720_010 Hb_001114_080--Hb_066720_010 Hb_000025_370--Hb_002028_090 Hb_118282_010 Hb_118282_010 Hb_000025_370--Hb_118282_010 Hb_011053_010 Hb_011053_010 Hb_000025_370--Hb_011053_010 Hb_005181_160 Hb_005181_160 Hb_000025_370--Hb_005181_160 Hb_004984_030 Hb_004984_030 Hb_000025_370--Hb_004984_030 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_009111_020--Hb_000300_700 Hb_003549_080 Hb_003549_080 Hb_009111_020--Hb_003549_080 Hb_002333_070 Hb_002333_070 Hb_009111_020--Hb_002333_070 Hb_000122_190 Hb_000122_190 Hb_009111_020--Hb_000122_190 Hb_000256_040 Hb_000256_040 Hb_009111_020--Hb_000256_040 Hb_001486_010 Hb_001486_010 Hb_009111_020--Hb_001486_010 Hb_000008_400 Hb_000008_400 Hb_000300_700--Hb_000008_400 Hb_004931_110 Hb_004931_110 Hb_000300_700--Hb_004931_110 Hb_065525_120 Hb_065525_120 Hb_000300_700--Hb_065525_120 Hb_004965_110 Hb_004965_110 Hb_000300_700--Hb_004965_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303267 0.317258 1.48693 0.322128 0.058359 0.0517958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.638008 0.989217 1.12426 0.237338 0.289522

CAGE analysis