Hb_000891_030

Information

Type -
Description -
Location Contig891: 37993-39151
Sequence    

Annotation

kegg
ID rcu:RCOM_1186550
description hypothetical protein
nr
ID XP_012076193.1
description PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
swissprot
ID Q56XJ7
description Uncharacterized protein At4g22758 OS=Arabidopsis thaliana GN=At4g22758 PE=2 SV=1
trembl
ID A0A067KPZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11253 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61645: 38024-39221 , PASA_asmbl_61646: 38000-38315 , PASA_asmbl_61647: 38072-39105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000891_030 0.0 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
2 Hb_002701_220 0.1726931778 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
3 Hb_011909_140 0.1728748172 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
4 Hb_000649_130 0.1741640899 - - Polcalcin Jun o, putative [Ricinus communis]
5 Hb_000465_510 0.178717393 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
6 Hb_006615_080 0.1795259472 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
7 Hb_001507_030 0.1910708632 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
8 Hb_000210_010 0.1948256058 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
9 Hb_000418_080 0.1981244532 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
10 Hb_001944_020 0.2049622616 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
11 Hb_000099_070 0.2086855236 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
12 Hb_172632_050 0.2093159988 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
13 Hb_088753_010 0.2103499024 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
14 Hb_006909_060 0.2131950977 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
15 Hb_002239_050 0.214476369 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
16 Hb_000649_240 0.214662985 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
17 Hb_003014_020 0.2153943089 - - electron transporter, putative [Ricinus communis]
18 Hb_001189_040 0.2156739295 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
19 Hb_017987_050 0.2159317289 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
20 Hb_005074_030 0.2182296094 - - -

Gene co-expression network

sample Hb_000891_030 Hb_000891_030 Hb_002701_220 Hb_002701_220 Hb_000891_030--Hb_002701_220 Hb_011909_140 Hb_011909_140 Hb_000891_030--Hb_011909_140 Hb_000649_130 Hb_000649_130 Hb_000891_030--Hb_000649_130 Hb_000465_510 Hb_000465_510 Hb_000891_030--Hb_000465_510 Hb_006615_080 Hb_006615_080 Hb_000891_030--Hb_006615_080 Hb_001507_030 Hb_001507_030 Hb_000891_030--Hb_001507_030 Hb_001944_020 Hb_001944_020 Hb_002701_220--Hb_001944_020 Hb_003605_240 Hb_003605_240 Hb_002701_220--Hb_003605_240 Hb_000210_010 Hb_000210_010 Hb_002701_220--Hb_000210_010 Hb_012573_040 Hb_012573_040 Hb_002701_220--Hb_012573_040 Hb_006909_060 Hb_006909_060 Hb_002701_220--Hb_006909_060 Hb_001648_030 Hb_001648_030 Hb_002701_220--Hb_001648_030 Hb_001153_180 Hb_001153_180 Hb_011909_140--Hb_001153_180 Hb_011909_140--Hb_002701_220 Hb_000451_070 Hb_000451_070 Hb_011909_140--Hb_000451_070 Hb_088753_010 Hb_088753_010 Hb_011909_140--Hb_088753_010 Hb_061195_020 Hb_061195_020 Hb_011909_140--Hb_061195_020 Hb_005074_030 Hb_005074_030 Hb_000649_130--Hb_005074_030 Hb_000649_130--Hb_000210_010 Hb_000178_130 Hb_000178_130 Hb_000649_130--Hb_000178_130 Hb_000327_380 Hb_000327_380 Hb_000649_130--Hb_000327_380 Hb_116608_010 Hb_116608_010 Hb_000649_130--Hb_116608_010 Hb_007943_050 Hb_007943_050 Hb_000649_130--Hb_007943_050 Hb_003929_150 Hb_003929_150 Hb_000465_510--Hb_003929_150 Hb_001322_070 Hb_001322_070 Hb_000465_510--Hb_001322_070 Hb_000768_130 Hb_000768_130 Hb_000465_510--Hb_000768_130 Hb_002060_010 Hb_002060_010 Hb_000465_510--Hb_002060_010 Hb_000465_510--Hb_000327_380 Hb_010560_030 Hb_010560_030 Hb_000465_510--Hb_010560_030 Hb_002231_030 Hb_002231_030 Hb_006615_080--Hb_002231_030 Hb_006615_080--Hb_000210_010 Hb_006615_080--Hb_000649_130 Hb_011236_010 Hb_011236_010 Hb_006615_080--Hb_011236_010 Hb_017987_050 Hb_017987_050 Hb_006615_080--Hb_017987_050 Hb_000342_060 Hb_000342_060 Hb_006615_080--Hb_000342_060 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_005663_070 Hb_005663_070 Hb_001507_030--Hb_005663_070 Hb_001507_030--Hb_001944_020 Hb_003020_180 Hb_003020_180 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3603 226.086 43.089 174.995 8.66202 17.7985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.5918 311.348 81.7846 58.8908 58.826

CAGE analysis